AMCG00005335 (LOC106569412)


Basic Information

Item Value
gene id AMCG00005335
gene name LOC106569412
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21756187 ~ 21757882 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005335
ATGGACACGCAGGGCCCCTTCCTGTGGCCCCCGCCCCACCCGGAGCTCAAGGGAAGTGAAAAGCGCTGCGGGGGGGCCATGACCAGACAGGAAcacCACCTGAAGGACGTGCTGATGGCGGTGGTGTCTCGCAGGAAGGCGTACCGGCTGCGTGACGGACACTTCCCCTATGCCTTCAGCAGCGACATCACGCCGCAGCCCTACCTGAAGAACAGCGTGGCGGCCTATCACAGCACCACGGAATGTCCCCCCCCAAGCGCCTCTCTCCCAGCCGGGCCGCCCCCCAGAGTCTCCCCAGATGAGGCGGAGCAGCAGGCTGCTCTCCTATTGGCCTGTTCAGGGGACTGCCTGCCCGCCCCCCTGCCCCCGGTCAGCATGGCCGACCTCCTGGAGGCTCTGCagGTGCAGCGTGAGGCGGTGGCGTCGCACACGGTCTACGCCCTGAACATGGAGCGCGTGTTGGCGCGGCTCTGGCACCCAAGCCACGAGGAGCTGCAGCAGGACCACACTCACCGGCGCCGGGGACTCGGCAAGGACCGCCTGCTGGTGTGCTGA

Function

NR:

description
PREDICTED: transcriptional adapter 1-like

GO: NA

KEGG:

id description
K11317 TADA1, STAF42; transcriptional adapter 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005335 True 555 mRNA 0.68 4 21756187 21757882

Neighbor

gene id symbol gene type direction distance location
AMCG00005338 NA coding upstream 15359 21737684 ~ 21740828 (+)
AMCG00005337 NA coding upstream 18537 21733381 ~ 21737650 (+)
AMCG00005336 LOC106584283,LOC106613957 coding upstream 28317 21722580 ~ 21727870 (+)
AMCG00005339 ralgps2,LOC107581502,LOC107712857 coding upstream 47793 21707342 ~ 21708394 (+)
AMCG00005322 NA coding upstream 77084 21677587 ~ 21679103 (+)
AMCG00005344 NA coding downstream 115145 21873027 ~ 21878534 (+)
AMCG00005349 LOC107687326 coding downstream 159233 21917115 ~ 21919897 (+)
AMCG00005348 NA coding downstream 163002 21920884 ~ 21928473 (+)
AMCG00005350 NA coding downstream 174484 21932366 ~ 21937327 (+)
AMCG00005356 plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802 coding downstream 262980 22020862 ~ 22024488 (+)
G146928 NA non-coding upstream 10736 21744879 ~ 21745451 (+)
G146915 NA non-coding upstream 43404 21710357 ~ 21712783 (+)
G146815 NA non-coding upstream 357216 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 427285 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 691279 21063973 ~ 21064908 (+)
G147022 NA non-coding downstream 190204 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 192446 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 198719 21956601 ~ 21957045 (+)
G147066 NA non-coding downstream 323762 22081644 ~ 22087344 (+)
AMCG00005340 ralgps2,LOC106531732 other upstream 51669 21680708 ~ 21704518 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other upstream 183866 21566638 ~ 21572321 (+)
G146790 NA other upstream 415475 21337432 ~ 21340712 (+)
AMCG00005280 NA other upstream 952990 20797458 ~ 20803197 (+)
AMCG00005286 NA other upstream 1053715 20699486 ~ 20702472 (+)
G146952 NA other downstream 53850 21811732 ~ 21848136 (+)
AMCG00005345 NA other downstream 125317 21883199 ~ 21887568 (+)
G147021 NA other downstream 187676 21945558 ~ 21947991 (+)
G147025 NA other downstream 194687 21952569 ~ 21952882 (+)
G147029 NA other downstream 199558 21957440 ~ 21984144 (+)

Expression


Co-expression Network