AMCG00005336 (LOC106584283,LOC106613957)


Basic Information

Item Value
gene id AMCG00005336
gene name LOC106584283,LOC106613957
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21722580 ~ 21727870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005336
ATGTACCTGTCAGACCTGACATACATCGACTCAGCCTACCCCTCCACCGGCAGCATCATGGATAATGAGCCGCGCTCCAACCTCATGAACAACATCCTGCGCATCATCTCCGACCTGCAGCGCTCCTGCCAGTACGACATCCCAGTCCTGCCTCACATCCAGAAGTATCTGAACTCCATGAGCTACATCGACGAGCTGCAGAAGTTCGTGGAGGACGACAACTACAAGCAGTCCCTGAAGATCGAGCCGGGCAGCAGCACGCCGCGCTCCACCGCCTCCCGGGAGGACCTCGAGGGCCCAGACGCGGCCGCCTCGCCTCAGTGTGGCCGCCGGACAGCAGCAGAAGGGGCCCTGGCCAAGGTGCCGCCCACCCCCCCGTCGCCCAGGAACCTCATCCCGTACGGACACAGGAAGTGCCAGAGTCTGGGATACAATTTCATCCACAAGATGAACACGGCGGAGTTTAAGAGCGCTACCTTCCCGAACGTGGGTTCGAGGCACCTGCTGGACGACAGTGTGCTGGAGAGCCACACCCCCTCGCGTGGCCAGGCCGAGAGCTCCACACTGTCCAGCGGCATCTCGCTGGGGAGCAGTGAGGGCTCGGAGCTGAGCGAGGAGATGTCCTGGCCGGCGTTCGAGAGGAGCCGTTTCTATCACTCCCTGGGGCCCGTAACCAGGGTGGGCCGCATTCCCCACCGAGGAACCGTGAAGCCCAACAGCTCAGCGGAGTCGGAGGAGCTGGCGGTGCACCTGTACCCCGGCACGGTGACGGTGCAGGGCGTGCTGCGCCGCAAGACACTGATGAAGGAGGGGAAGAAGCCCACGGTGAGACCGGGGACCAGGGAGGGGagagagagagggggagagcgagagggagaaggaggacCACGATTCACCTGCTGCGCCGAGCTGAGCCAccggagagaggaggaggaggaagaagaggaagaggaccGGAGCATGGAGCAGACAGCAGACGACAATCACTAA

Function

NR:

description
PREDICTED: ras-specific guanine nucleotide-releasing factor RalGPS2-like isoform X1

GO: NA

KEGG:

id description
K24023 RALGPS; Ras-specific guanine nucleotide-releasing factor RalGPS

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005336 True 990 mRNA 0.63 9 21722580 21727870

Neighbor

gene id symbol gene type direction distance location
AMCG00005339 ralgps2,LOC107581502,LOC107712857 coding upstream 14186 21707342 ~ 21708394 (+)
AMCG00005322 NA coding upstream 43477 21677587 ~ 21679103 (+)
AMCG00005317 NA coding upstream 55690 21662349 ~ 21666890 (+)
AMCG00005316 LOC107721804,LOC107712838,LOC105910841,LOC107597850,LOC101160230,LOC107581484 coding upstream 69792 21641391 ~ 21652788 (+)
AMCG00005315 NA coding upstream 87413 21630980 ~ 21635167 (+)
AMCG00005337 NA coding downstream 5511 21733381 ~ 21737650 (+)
AMCG00005338 NA coding downstream 9814 21737684 ~ 21740828 (+)
AMCG00005335 LOC106569412 coding downstream 28317 21756187 ~ 21757882 (+)
AMCG00005344 NA coding downstream 145157 21873027 ~ 21878534 (+)
AMCG00005349 LOC107687326 coding downstream 189245 21917115 ~ 21919897 (+)
G146915 NA non-coding upstream 9797 21710357 ~ 21712783 (+)
G146815 NA non-coding upstream 323609 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 393678 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 657672 21063973 ~ 21064908 (+)
G146703 NA non-coding upstream 855174 20867206 ~ 20867406 (+)
G146928 NA non-coding downstream 17009 21744879 ~ 21745451 (+)
G147022 NA non-coding downstream 220216 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 222458 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 228731 21956601 ~ 21957045 (+)
G147066 NA non-coding downstream 353774 22081644 ~ 22087344 (+)
AMCG00005340 ralgps2,LOC106531732 other upstream 18062 21680708 ~ 21704518 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other upstream 150259 21566638 ~ 21572321 (+)
G146790 NA other upstream 381868 21337432 ~ 21340712 (+)
AMCG00005280 NA other upstream 919383 20797458 ~ 20803197 (+)
AMCG00005286 NA other upstream 1020108 20699486 ~ 20702472 (+)
G146952 NA other downstream 83862 21811732 ~ 21848136 (+)
AMCG00005345 NA other downstream 155329 21883199 ~ 21887568 (+)
G147021 NA other downstream 217688 21945558 ~ 21947991 (+)
G147025 NA other downstream 224699 21952569 ~ 21952882 (+)
G147029 NA other downstream 229570 21957440 ~ 21984144 (+)

Expression


Co-expression Network