Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00005338 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 21737684 ~ 21740828 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0030166 | proteoglycan biosynthetic process | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0048701 | embryonic cranial skeleton morphogenesis | biological_process |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| K20825 | FAM20B; glycosaminoglycan xylosylkinase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00005338 | True | 1146 | mRNA | 0.67 | 4 | 21737684 | 21740828 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00005337 | NA | coding | upstream | 34 | 21733381 ~ 21737650 (+) |
| AMCG00005336 | LOC106584283,LOC106613957 | coding | upstream | 9814 | 21722580 ~ 21727870 (+) |
| AMCG00005339 | ralgps2,LOC107581502,LOC107712857 | coding | upstream | 29290 | 21707342 ~ 21708394 (+) |
| AMCG00005322 | NA | coding | upstream | 58581 | 21677587 ~ 21679103 (+) |
| AMCG00005317 | NA | coding | upstream | 70794 | 21662349 ~ 21666890 (+) |
| AMCG00005335 | LOC106569412 | coding | downstream | 15359 | 21756187 ~ 21757882 (+) |
| AMCG00005344 | NA | coding | downstream | 132199 | 21873027 ~ 21878534 (+) |
| AMCG00005349 | LOC107687326 | coding | downstream | 176287 | 21917115 ~ 21919897 (+) |
| AMCG00005348 | NA | coding | downstream | 180056 | 21920884 ~ 21928473 (+) |
| AMCG00005350 | NA | coding | downstream | 191538 | 21932366 ~ 21937327 (+) |
| G146915 | NA | non-coding | upstream | 24901 | 21710357 ~ 21712783 (+) |
| G146815 | NA | non-coding | upstream | 338713 | 21398676 ~ 21398971 (+) |
| G146782 | NA | non-coding | upstream | 408782 | 21326532 ~ 21328902 (+) |
| G146749 | NA | non-coding | upstream | 672776 | 21063973 ~ 21064908 (+) |
| G146703 | NA | non-coding | upstream | 870278 | 20867206 ~ 20867406 (+) |
| G146928 | NA | non-coding | downstream | 4051 | 21744879 ~ 21745451 (+) |
| G147022 | NA | non-coding | downstream | 207258 | 21948086 ~ 21948618 (+) |
| G147024 | NA | non-coding | downstream | 209500 | 21950328 ~ 21950587 (+) |
| G147027 | NA | non-coding | downstream | 215773 | 21956601 ~ 21957045 (+) |
| G147066 | NA | non-coding | downstream | 340816 | 22081644 ~ 22087344 (+) |
| AMCG00005340 | ralgps2,LOC106531732 | other | upstream | 33166 | 21680708 ~ 21704518 (+) |
| AMCG00005329 | ipo13,LOC103463745,LOC105910849 | other | upstream | 165363 | 21566638 ~ 21572321 (+) |
| G146790 | NA | other | upstream | 396972 | 21337432 ~ 21340712 (+) |
| AMCG00005280 | NA | other | upstream | 934487 | 20797458 ~ 20803197 (+) |
| AMCG00005286 | NA | other | upstream | 1035212 | 20699486 ~ 20702472 (+) |
| G146952 | NA | other | downstream | 70904 | 21811732 ~ 21848136 (+) |
| AMCG00005345 | NA | other | downstream | 142371 | 21883199 ~ 21887568 (+) |
| G147021 | NA | other | downstream | 204730 | 21945558 ~ 21947991 (+) |
| G147025 | NA | other | downstream | 211741 | 21952569 ~ 21952882 (+) |
| G147029 | NA | other | downstream | 216612 | 21957440 ~ 21984144 (+) |
