AMCG00005344


Basic Information

Item Value
gene id AMCG00005344
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21873027 ~ 21878534 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005344
CGGCTGTATGCCCTCATCTGACTCGGACCGACAGGCGCCGCAGCCGCTCGTCCCCCGACGCTGCGATTGGAGGCGGCGGGGTCCTGCGGAGAGACGCCCCTCGCTGGCGGAGTCTGCGCAGTGGCGTGTTGTGCGAGGCTGCGAGGGGAGGCGATGGACGTGTGGCGGGccggcctgctgctgctgtcggCGCTGGTGTGGGAGCGGGGCCGCCGCGCCTCCGCCTTCTCCCAGGCCATGGACAGCGACTTCACGTTCACCCTGCCCGCCGGGCACCGGGAGTGCTTCTACCAGAGCATGCGCAGAGACGCGTCGCTGGAGATCGAGtaccagGTGCTCGATGGCGCCGGTCTGGACGTGGATTTCTACCTCTATTCGCCGTCGGGGGCCGTGCTGGCCAGGGACCACAGGAAGTCTGACGGCGTGCACACggTGGAGACGGAGGACGGTGACTACATGTTCTGCTTCGATAACAGCTTCAGCGCCCTGTCAGAGAAGATCATATTCTTCGAGCTGATCCTGGACAACATGGACGGCGAGGACACCAGCGACCCCGAGGACTGGAAGGAGTACGTCCACGGCATCGACCTGCTGGACATGAAGCTGGAGGACATCATGgACTCGATCAACAGCGTGAAGGCGCGGCTCAGTAAGAGTGCGCAGATCCAGACGCTGCTCCGGGCGTTCGAGGCGCGCGACCGCAACCTGCAGGAGAGCAACTACGAGCGCGTCAACGCCTGGTCCCTGGCCGGCGTGCTCGTCATGGCCACGGTGTCGGCCCTGCAGGTGTACCTGCTGCGCAGCCTGTTCGACGACCGCAGGAAGAGCCGCACGTAGGGGGGGGCTGTGCGGTGacgtgggggtggggggagtgaaAATGTCCAGAAGGGAGTCGAGGTATTGGGGGAGGAGTGGGAGGAGGTCGCTGTTCACACAATCTAGCCTTAAACAAACGGGACGCCTGCCGGGGAGAGGGGCGGTCTAACCCAGACCAGATCGATCCTCAAACACGTCTGCTTTTCACTGTAGCTGAGCGCTTAAGTAATGCGATTAATGATGTAACGAGCCCCTCCCGTGCCGGCCGCAgtgcgggggggtggggagagagcCGAGTGCTGCTCTGCTCTGATTGGCTGCCTGGACACTTGCATAGGAAATGAGCGTCCCAAGCCACACCGACACAGGAAGTCGACTCCATCGCAGTCGGGTGTGTTTCTGTACAGGCCggctcctctcctcctctcctcggCAGATGGATGGCGCCCCCTCCCGTGTGCCCCCCAGTCTGCCGCTCAGTCAGAGAGAAGCGTTCAGGCACTCAACTCGACGCTGCTTTCTGCGGGTTTAGTTCCAGTGGAGCTCTGCTGGGGGCCGGGGAGACCGTCGCTGCTTAGCGTGTTTCTGTATTCGCCTGTTACATTGGTTTTCTgttacccccccccaccagggcACAGCCGGCCCCCTGCTGCCAGAGAGGGGGTCGGCCGGGTGGCCACTTCTGTCCCTTTGGTCTGAGGTTCAGCGGTGTGGAGAGAGCGGGTGACGTGTTAAAAGACAGCCGCTCTGAGTTGAAGTCGTGTACAATTGTAAATGTGTACAATTAAAGCCTCCTACTTTTCTGAGacggctgtgtgtgttgtgtctgtgggtgggggggagactGGTCTCagtcttcacacacacaaggaattgaaataaatgaggAGTACAGTCCGCTCACGCTGCTGTCTGTGTCTCCACTAAGGGAAGGGGGTGAGAGGTGCTTTACGGGCCTCCGCCAGGGGGCGCTGTGACGCAGCGGACAGGACAGCGGAGACCGGAAATCGAGCCGCGACGACTTCCTCTATTTGCACCATAGAGACATGTGGCCACCCAGCGGCGCACACTTCCGCATTACTGCGCAGATGTGCGGAATCCtcccgctcccattggtggagccccGCAGAGCTGCGCGCACACATCTCTGACAGCCGGGCTGCTGCTCCCGTGTTGAGATGCGGATCTGGCCGCCCGTCGCACTCATGGCTGCGCCAGAAACCGGCTGGTAACAAGAGACGGGCCTGTGGATCCGAGGAGCGGCTTCAACTGCGACTCCTTCCAGGTGCAGAGGTTTCTACGAGCCGCGCAGACACGGACTCTGCTCCCGGACCCGCCTGCCTGTCCGTCTGTCTGCTGTGTCGGTGCCGCAGGTGGCGATGGGTGCGGAGACTGACCCCGGGGTGCCGCCCGCAGCCGCCTGGCGGAAGGTCCTGTACGAGCAGCAGCCGTTCCCCGACAACTACGTCGACCGGCGCTTCCTGGAGGAGCTGCGGCGCAACGAGGGGCTGCGGCGGCACCGGCTGGGGGCGCTGGTGCGCGGGGCGG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14825 TMED5, ERP2, ERP4; p24 family protein gamma-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005344 True 2364 mRNA 0.63 5 21873027 21878534

Neighbor

gene id symbol gene type direction distance location
AMCG00005335 LOC106569412 coding upstream 115145 21756187 ~ 21757882 (+)
AMCG00005338 NA coding upstream 132199 21737684 ~ 21740828 (+)
AMCG00005337 NA coding upstream 135377 21733381 ~ 21737650 (+)
AMCG00005336 LOC106584283,LOC106613957 coding upstream 145157 21722580 ~ 21727870 (+)
AMCG00005339 ralgps2,LOC107581502,LOC107712857 coding upstream 164633 21707342 ~ 21708394 (+)
AMCG00005349 LOC107687326 coding downstream 38581 21917115 ~ 21919897 (+)
AMCG00005348 NA coding downstream 42350 21920884 ~ 21928473 (+)
AMCG00005350 NA coding downstream 53832 21932366 ~ 21937327 (+)
AMCG00005356 plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802 coding downstream 142328 22020862 ~ 22024488 (+)
AMCG00005358 NA coding downstream 145989 22024523 ~ 22031098 (+)
G146928 NA non-coding upstream 127576 21744879 ~ 21745451 (+)
G146915 NA non-coding upstream 160244 21710357 ~ 21712783 (+)
G146815 NA non-coding upstream 474056 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 544125 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 808119 21063973 ~ 21064908 (+)
G147022 NA non-coding downstream 69552 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 71794 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 78067 21956601 ~ 21957045 (+)
G147066 NA non-coding downstream 203110 22081644 ~ 22087344 (+)
G146952 NA other upstream 24891 21811732 ~ 21848136 (+)
AMCG00005340 ralgps2,LOC106531732 other upstream 168509 21680708 ~ 21704518 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other upstream 300706 21566638 ~ 21572321 (+)
G146790 NA other upstream 532315 21337432 ~ 21340712 (+)
AMCG00005280 NA other upstream 1069830 20797458 ~ 20803197 (+)
AMCG00005345 NA other downstream 4665 21883199 ~ 21887568 (+)
G147021 NA other downstream 67024 21945558 ~ 21947991 (+)
G147025 NA other downstream 74035 21952569 ~ 21952882 (+)
G147029 NA other downstream 78906 21957440 ~ 21984144 (+)
AMCG00005351 NA other downstream 88324 21966858 ~ 21969692 (+)

Expression


Co-expression Network