AMCG00005345


Basic Information

Item Value
gene id AMCG00005345
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21883199 ~ 21887568 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005345
ATGGTGTCCCTCCAGCGGTCAGCCACTCAGCTGGACAGTGGAGCGGCACCACAGGCACGGACAGGCCCGGCCCGGTCCGgtcaggagagggagagggagagagaagagtgAGCCCCGGGGGGCAGTGGGGGGCGCTTAGCCTCAGTCCAGGAGGGACGGGTCTCCTGGCCGGATTATCGTGGGTCTGgtgggagaaggaggaggacgCCGGCTGCAGAGGAGAAAcagagaagagacagagagagggagggagggggtcgGTGTGTGtgggatggatggatggatggagagatggaggagaaggagaagaagtaCATGCTGCCCCTGGACAATCTGAAGGTGCGTGATGTGGAGAAGGGCTTCATGTCCAGCAAGTACATCTTCGCCCTCTTCAACACGGAGCAGAGCTGGAAGGCCTCTCTGCTGCGCGCCGGAGTCTACCCTGAGAAAGCCCCGgtGGACAGCGAGGACTCCGGCCCGCTGGACAACTTCTCGATGGACCCACAGTTGGAGCGGCAGGTGGAGACGATCCGGAACCTGGTGGACTCCTACATGGCCATCGTCAACAAGTGCATCCGCGACCTCATGCCCAAGACCATCATGCACCTGATGATCATCAACGTGAAGGAGTTCATCAACGCCGAGCTGCTGGCCCAGCTGTACTCCACGGGGGACCAGAGCGCGCTGATGGACGAGTCGGCGGAGCAGGCGCAGCGCCGGGACGAGGTCCTCCGCACGCACCACGCCCTGCAGGAGGCGCTGTCCATCATCGGGGACATCTCCACCTCCACCACCTCCACCCCCATGCCGCCCCCCGTGGACAACACCTGGCTGCAGGCCGGGCAGGGCGGCGCCCGCAGgtcgcccccccccagccccacgGCCCCCCGCCGCATGCAGCTGGGCTCCCGGGCCCCCGCCCCCCCCGTGCCACACCGCCCCGGCCCCCTGCCACCGTTCAACAACAGCGCCGATGCGCCGCCCCCCCAGGTGCCCAGCCGGCCCAACCGCGCCCCCCCCAGCATTCCCAGGTGA
>TU184903
ggtatgacattcgTAGTtatccaatcagttggcacatcccgttctaagtgtcaaaacactccatctctctcttcctccctctccattCATTGCGCTTAAATTGCGCTCAAATTGTCTCTGACTGTCCTGATCACTGTGTCTCcccaggagaaggagaagaagtaCATGCTGCCCCTGGACAATCTGAAGGTGCGTGATGTGGAGAAGGGCTTCATGTCCAGCAAGTACATCTTCGCCCTCTTCAACACGGAGCAGAGGAATGTGTACAAGGACTACCGGTACCTGGAGCTGGCCTGCGACACCCAGGAGGAGGTGGACAGCTGGAAGGCCTCTCTGCTGCGCGCCGGAGTCTACCCTGAGAAAGCCCCGgtGGACAGCGAGGACTCCGGCCCGCTGGACAACTTCTCGATGGACCCACAGTTGGAGCGGCAGGTGGAGACGATCCGGAACCTGGTGGACTCCTACATGGCCATCGTCAACAAGTGCATCCGCGACCTCATGCCCAAGACCATCATGCACCTGATGATCATCAACGTGAAGGAGTTCATCAACGCCGAGCTGCTGGCCCAGCTGTACTCCACGGGGGACCAGAGCGCGCTGATGGACGAGTCGGCGGAGCAGGCGCAGCGCCGGGACGAGGTCCTCCGCACGCACCACGCCCTGCAGGAGGCGCTGTCCATCATCGGGGACATCTCCACCTCCACCACCTCCACCCCCATGCCGCCCCCCGTGGACAACACCTGGCTGCAGGCCGGGCAGGGCGGCGCCCGCAGgtcgcccccccccagccccacgGCCCCCCGCCGCATGCAGCTGGGCTCCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005345 True 1035 mRNA 0.67 7 21883199 21887568
TU184903 False 825 TUCP 0.62 6 21885270 21887445

Neighbor

gene id symbol gene type direction distance location
AMCG00005344 NA coding upstream 4665 21873027 ~ 21878534 (+)
AMCG00005335 LOC106569412 coding upstream 125317 21756187 ~ 21757882 (+)
AMCG00005338 NA coding upstream 142371 21737684 ~ 21740828 (+)
AMCG00005337 NA coding upstream 145549 21733381 ~ 21737650 (+)
AMCG00005336 LOC106584283,LOC106613957 coding upstream 155329 21722580 ~ 21727870 (+)
AMCG00005349 LOC107687326 coding downstream 29547 21917115 ~ 21919897 (+)
AMCG00005348 NA coding downstream 33316 21920884 ~ 21928473 (+)
AMCG00005350 NA coding downstream 44798 21932366 ~ 21937327 (+)
AMCG00005356 plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802 coding downstream 133294 22020862 ~ 22024488 (+)
AMCG00005358 NA coding downstream 136955 22024523 ~ 22031098 (+)
G146928 NA non-coding upstream 137748 21744879 ~ 21745451 (+)
G146915 NA non-coding upstream 170416 21710357 ~ 21712783 (+)
G146815 NA non-coding upstream 484228 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 554297 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 818291 21063973 ~ 21064908 (+)
G147022 NA non-coding downstream 60518 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 62760 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 69033 21956601 ~ 21957045 (+)
G147066 NA non-coding downstream 194076 22081644 ~ 22087344 (+)
G146952 NA other upstream 35063 21811732 ~ 21848136 (+)
AMCG00005340 ralgps2,LOC106531732 other upstream 178681 21680708 ~ 21704518 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other upstream 310878 21566638 ~ 21572321 (+)
G146790 NA other upstream 542487 21337432 ~ 21340712 (+)
AMCG00005280 NA other upstream 1080002 20797458 ~ 20803197 (+)
G147021 NA other downstream 57990 21945558 ~ 21947991 (+)
G147025 NA other downstream 65001 21952569 ~ 21952882 (+)
G147029 NA other downstream 69872 21957440 ~ 21984144 (+)
AMCG00005351 NA other downstream 79290 21966858 ~ 21969692 (+)
AMCG00005365 sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 other downstream 244997 22132565 ~ 22145610 (+)

Expression


Co-expression Network