AMCG00005348


Basic Information

Item Value
gene id AMCG00005348
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21920884 ~ 21928473 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005348
TCCATAGCAACAGCAGATCCGCAGTACGGCGACCCCTCCGTGTCCGTGCGCGTCACTCTTTACCCGCCCGGGCCGCCATGCTGCGCAGACCGCGTAGCCCAACAGTTGGTGAATACCGAGCCTGCGCGTCTGTTTATCTTCCCGGTCGCCCGAGAGAGAGAAGCGGTAGAGAGAGTCGGAGTGACgggcagagaggcagagagagagcgctGGAGTACCGCACCGCCCGCGGCTGTTGACGGCTCTCATTGTGCCGCTGTGTTGCGTGCGCAGCTGGGGGGCAGTGGACAGGCCGGACGAGGACACCGCAGGACCGCAGGACACAAGCGCAGCTCAGACACGCAGGGGGAGCCGGAGGGACGGGAGCCGCAGGGAGACGCCATGCCACCCAAATTCAAACGGCACCTGAACGACGATGACACCCAGGTGGACGAGGTGATTGACGTGATGCAGGAGAACATCACCAAAGTGATGGAGAGAGGAGAGCGCCTCGACGAGCTGCAGGACAAGTCGGAGAGCCTATCAGACAACGCCTCAGCGTTCAGCAGCCGAGCAAAGCAGCTGCACCGACGGATGTGGTGGAGAGACTGCAAGATGAAGGTGATAATTGCGCTGGTGGTCGTCATCATACTGCTGATCATCATCGTTCCAGTCATCCTGCAGTACCACTAGTGCCAGGCGGGGGCAGCACAGTGGGGCTGGAGCTGGTGGTTCAGTGCTAGTGTGACCCGGTGGCGGGGACTGGCCTCGCCACCCTGAAGCAGAGAGCCCTGGCGACTGTCTGACTCCAAGCGatcgctccctctccctccctctcgttctctccctccctcagaaGATTCAGAATCGGAACCACTGTGTCGTCCGGACTGAGTGACACCAGCGTTGCCAatgcactgactgacagacCCGGCGCTCAGGAACTGGGCCACAGGAACCTTCTCCGTCTCCCTCCCCCTCTAATCGGCCCAGCGCTGCCATAGACTGCATGCCTgcgtgtgagtgcgtgtgtcgCCCCGGTCCTGGGGGTTGTGATTGAATTACAATAGGAAGCCCCTGCCAGTCCAGCCGGCCTGACGCCCCACTGGTAGCCCTGCCAGGTGTTCAGAGATCAGCACTGAtttgtaaatactgtattattttgtatttcttttttctttcggGGGGGATAGATTAGGCAGAGCTGCAGTATCTCTAGGTTGGTCAAGATGGGGGGGTGGGAATCTGTTAGGGGCGTGGCCACAGCATTGGTCTCTAATTGGCTGTGAGGCTCTGTCTGTTACAGCGGGGGGCCGGGTCTCGTGTCGCCGGATCGTGAGTCTCTGTACTGTCGGGACCGGAGTGAAGGACgcgccccgccccgccccgccccgccccgccccatgtgtctgtgtatatctCTGTACCTCCCTGATCGCCAGCGTGTTGGAACTGTGAACTGGTTTAACTGTTTCTTTTGAGTAAAGTGATTTAAAACAGACCAGCCCGA

Function

GO: NA

KEGG:

id description
K08513 VAMP4; vesicle-associated membrane protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005348 True 1489 mRNA 0.60 7 21920884 21928473

Neighbor

gene id symbol gene type direction distance location
AMCG00005349 LOC107687326 coding upstream 987 21917115 ~ 21919897 (+)
AMCG00005344 NA coding upstream 42350 21873027 ~ 21878534 (+)
AMCG00005335 LOC106569412 coding upstream 163002 21756187 ~ 21757882 (+)
AMCG00005338 NA coding upstream 180056 21737684 ~ 21740828 (+)
AMCG00005337 NA coding upstream 183234 21733381 ~ 21737650 (+)
AMCG00005350 NA coding downstream 3893 21932366 ~ 21937327 (+)
AMCG00005356 plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802 coding downstream 92389 22020862 ~ 22024488 (+)
AMCG00005358 NA coding downstream 96050 22024523 ~ 22031098 (+)
AMCG00005357 NA coding downstream 131736 22060209 ~ 22061467 (+)
AMCG00005364 NA coding downstream 188016 22116489 ~ 22122971 (+)
G146928 NA non-coding upstream 175433 21744879 ~ 21745451 (+)
G146915 NA non-coding upstream 208101 21710357 ~ 21712783 (+)
G146815 NA non-coding upstream 521913 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 591982 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 855976 21063973 ~ 21064908 (+)
G147022 NA non-coding downstream 19613 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 21855 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 28128 21956601 ~ 21957045 (+)
G147066 NA non-coding downstream 153171 22081644 ~ 22087344 (+)
AMCG00005345 NA other upstream 33316 21883199 ~ 21887568 (+)
G146952 NA other upstream 72748 21811732 ~ 21848136 (+)
AMCG00005340 ralgps2,LOC106531732 other upstream 216366 21680708 ~ 21704518 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other upstream 348563 21566638 ~ 21572321 (+)
G146790 NA other upstream 580172 21337432 ~ 21340712 (+)
G147021 NA other downstream 17085 21945558 ~ 21947991 (+)
G147025 NA other downstream 24096 21952569 ~ 21952882 (+)
G147029 NA other downstream 28967 21957440 ~ 21984144 (+)
AMCG00005351 NA other downstream 38385 21966858 ~ 21969692 (+)
AMCG00005365 sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 other downstream 204092 22132565 ~ 22145610 (+)

Expression


Co-expression Network