Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00005349 |
| gene name | LOC107687326 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 21917115 ~ 21919897 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: inosine triphosphate pyrophosphatase-like, partial |
| id | name | namespace |
|---|---|---|
| GO:0009117 | nucleotide metabolic process | biological_process |
| GO:0009204 | deoxyribonucleoside triphosphate catabolic process | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0047429 | nucleoside-triphosphate diphosphatase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| K01519 | ITPA; inosine triphosphate pyrophosphatase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00005349 | True | 1146 | mRNA | 0.60 | 8 | 21917115 | 21919897 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00005344 | NA | coding | upstream | 38581 | 21873027 ~ 21878534 (+) |
| AMCG00005335 | LOC106569412 | coding | upstream | 159233 | 21756187 ~ 21757882 (+) |
| AMCG00005338 | NA | coding | upstream | 176287 | 21737684 ~ 21740828 (+) |
| AMCG00005337 | NA | coding | upstream | 179465 | 21733381 ~ 21737650 (+) |
| AMCG00005336 | LOC106584283,LOC106613957 | coding | upstream | 189245 | 21722580 ~ 21727870 (+) |
| AMCG00005348 | NA | coding | downstream | 987 | 21920884 ~ 21928473 (+) |
| AMCG00005350 | NA | coding | downstream | 12469 | 21932366 ~ 21937327 (+) |
| AMCG00005356 | plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802 | coding | downstream | 100965 | 22020862 ~ 22024488 (+) |
| AMCG00005358 | NA | coding | downstream | 104626 | 22024523 ~ 22031098 (+) |
| AMCG00005357 | NA | coding | downstream | 140312 | 22060209 ~ 22061467 (+) |
| G146928 | NA | non-coding | upstream | 171664 | 21744879 ~ 21745451 (+) |
| G146915 | NA | non-coding | upstream | 204332 | 21710357 ~ 21712783 (+) |
| G146815 | NA | non-coding | upstream | 518144 | 21398676 ~ 21398971 (+) |
| G146782 | NA | non-coding | upstream | 588213 | 21326532 ~ 21328902 (+) |
| G146749 | NA | non-coding | upstream | 852207 | 21063973 ~ 21064908 (+) |
| G147022 | NA | non-coding | downstream | 28189 | 21948086 ~ 21948618 (+) |
| G147024 | NA | non-coding | downstream | 30431 | 21950328 ~ 21950587 (+) |
| G147027 | NA | non-coding | downstream | 36704 | 21956601 ~ 21957045 (+) |
| G147066 | NA | non-coding | downstream | 161747 | 22081644 ~ 22087344 (+) |
| AMCG00005345 | NA | other | upstream | 29547 | 21883199 ~ 21887568 (+) |
| G146952 | NA | other | upstream | 68979 | 21811732 ~ 21848136 (+) |
| AMCG00005340 | ralgps2,LOC106531732 | other | upstream | 212597 | 21680708 ~ 21704518 (+) |
| AMCG00005329 | ipo13,LOC103463745,LOC105910849 | other | upstream | 344794 | 21566638 ~ 21572321 (+) |
| G146790 | NA | other | upstream | 576403 | 21337432 ~ 21340712 (+) |
| G147021 | NA | other | downstream | 25661 | 21945558 ~ 21947991 (+) |
| G147025 | NA | other | downstream | 32672 | 21952569 ~ 21952882 (+) |
| G147029 | NA | other | downstream | 37543 | 21957440 ~ 21984144 (+) |
| AMCG00005351 | NA | other | downstream | 46961 | 21966858 ~ 21969692 (+) |
| AMCG00005365 | sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 | other | downstream | 212668 | 22132565 ~ 22145610 (+) |
