AMCG00005350


Basic Information

Item Value
gene id AMCG00005350
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21932366 ~ 21937327 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005350
ATGTGGGGGCCGGTGGCCATCTGTCTGTCCTGCCTGCTGTGGGGGGGGGCGCTGGCGCAGGGCGGGGCCACGCTGAGGAGGGCCAATGACCGCAACGCCCGCTGCCACTACACCTTCACCGTGCCCAGCCCTGCTGAGGACACCTGCCCGCCTGCTGGGCCAGACCCCCAGATCGAGGGGCTGACCGCCCGACTCGGCCTGCTGGAGGCGCTGGTGGGCCGCCTGGTGGGGGGCGCTGCGGAGGAGGGCGGGGGGCTGCAGGCGGCGTACAGCCAGGCCCTGAAGGAGaagacagagctgcagagagacAAGGAGCAGCTGGACAGACAGgcacaggagctgcagaggTCAGTGGACACCCTGCGCCGGGAGAATGAGAGGCTGCGGGCGAGGCAGTGTGGACCCGCGTCCTCCAACCTGCAGGACAGCCACCAGAGACCCCCCAGTGATCCTGCCTGGCAGTTTGGGTACCAGGAGCTGAAGGCGGAGGTGACGGAGATGCCGGCGTCCCGGTTCGTCCAGCAGGGGGTGCCGCCCAGTCCTGACTCATTCGCCGGCAGCAAAGgctgCGGTGAGCTGGTGTGGGTGGGCGAGCCGCGGACGCACCGCAAGGCCGACAGCATCGCAGGCAAGTACGGCGTGTGGATGCAGGACCCTGAGCCGGCGGCGCCCTACAGCGCTGAGATGGTGTGGCGCGTGGACACGGTGGGCAGCGAGGTGCGCCAGCTGTTCGGCTACGAGGACGAGACCCAGCTGGCCCGCGGCTTCCCCACCaaagtgctgctgctgcccgaGCCCATGGAGAGCACCGGGGCGGTGCTGTACCGCGGCTCGCTCTACTACCAGCGCCGCCGCAGCCGCACCCTGCTGCGCTACAGCCTGGCCACCGAGAGCGTGGCGGCGCGCCGGGAGCTGCCCCACGCCGGCTTCCACGGCCAGTACCCCTACTCCTGGGGCGGCTACACCGACATTGACCTGGCGGTGGATGAGACCGGGCTCTGGGCCATCTACAGCACTAGCAAGGCCCGCGGCGCCATCGTGCTCTCGCTGCTCGACCCCGACACCCTGGAGGTGAAGAGGAGCTGGGAGACCAACATCCGTAAGCAGTCTGTGGCCAACGCCTTCGTGATCTGCGGCACGCTCTACACGGTGGCCAGCTACAGCGCCCCGGACACGGCGGTCACACACAGCTTCAGCACCGCCTCGGGGACGGCCAAGGAGCTGGCCGTGCCCTTCCGCAACCGCTACCGGTACAACAGCATGGTGGACTACAACCCCCGCACCAGGAAGCTAGCGGAGCGGAGggtcccgtcccgtcccgtcccgcCTCTGAGCGCCTCAGCCGGCCAGCGGAGGACTGGCGGAGACGGATGGGGGGGGTGGATAGAGATACTGCACAGTAAGGGGACCGGTCTGACCAGTGGCCATGTCCTGATTGAGGTGATCCCTCCAGCCCCGGGCCTGCTGGACTCGGGGCGTCTGCTGCCTGGTCTGGCCCCTGGCGCTGCTGGGTCTCCAGCTGACCCGGCCCCGGTTCCAGAGCAGAGGATGACCGACGGGGCTGAAAGCAGGTGCATTAGACGAGTTAGGAGCCTGGCATGA

Function

GO: NA

KEGG:

id description
K23027 MYOC; myocilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005350 True 1602 mRNA 0.69 5 21932366 21937327

Neighbor

gene id symbol gene type direction distance location
AMCG00005348 NA coding upstream 3893 21920884 ~ 21928473 (+)
AMCG00005349 LOC107687326 coding upstream 12469 21917115 ~ 21919897 (+)
AMCG00005344 NA coding upstream 53832 21873027 ~ 21878534 (+)
AMCG00005335 LOC106569412 coding upstream 174484 21756187 ~ 21757882 (+)
AMCG00005338 NA coding upstream 191538 21737684 ~ 21740828 (+)
AMCG00005356 plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802 coding downstream 83535 22020862 ~ 22024488 (+)
AMCG00005358 NA coding downstream 87196 22024523 ~ 22031098 (+)
AMCG00005357 NA coding downstream 122882 22060209 ~ 22061467 (+)
AMCG00005364 NA coding downstream 179162 22116489 ~ 22122971 (+)
AMCG00005366 NA coding downstream 186455 22123782 ~ 22130249 (+)
G146928 NA non-coding upstream 186915 21744879 ~ 21745451 (+)
G146915 NA non-coding upstream 219583 21710357 ~ 21712783 (+)
G146815 NA non-coding upstream 533395 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 603464 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 867458 21063973 ~ 21064908 (+)
G147022 NA non-coding downstream 10759 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 13001 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 19274 21956601 ~ 21957045 (+)
G147066 NA non-coding downstream 144317 22081644 ~ 22087344 (+)
AMCG00005345 NA other upstream 44798 21883199 ~ 21887568 (+)
G146952 NA other upstream 84230 21811732 ~ 21848136 (+)
AMCG00005340 ralgps2,LOC106531732 other upstream 227848 21680708 ~ 21704518 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other upstream 360045 21566638 ~ 21572321 (+)
G146790 NA other upstream 591654 21337432 ~ 21340712 (+)
G147021 NA other downstream 8231 21945558 ~ 21947991 (+)
G147025 NA other downstream 15242 21952569 ~ 21952882 (+)
G147029 NA other downstream 20113 21957440 ~ 21984144 (+)
AMCG00005351 NA other downstream 29531 21966858 ~ 21969692 (+)
AMCG00005365 sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 other downstream 195238 22132565 ~ 22145610 (+)

Expression


Co-expression Network