AMCG00005351


Basic Information

Item Value
gene id AMCG00005351
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21966858 ~ 21969692 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005351
GCCGCCCCCATCGGGACCGTCTCTCCCCCCCACCGCACGGCTGCTGTCCTGGCCAGCATCATCTCTGCCCTGCGATGCCTTTCACTACACCTGGCCTGCGCTGAGGCAGGGGCTGCGCGTCTCTCGTGGATCGAGACTTTCACAGGCAAGTACTTCCACAGCCGGGACTACAAGAGTCCCGAGGAGTTCAGAGGGAAGAGCGTGGTGGTGATCGGCATCGGCAACTCTGGAGGGGACATCGCTGTGGAGCTGAGCCACGTGACCGACAAGCTGTTCCTCAGTACCCGGCGGGGGGCGTGGATTCTGAACCGCGTGGGCGCGGGAGGCGTCCCAGGAGACATGCAGTTTGGCCGTGTGGCCAGGACGCTGCAGGGTGTGCTGCCCCTGGGCTTCTACAGCAGCCTGGGCGAGAAGCACCTCAACAGCAGGTTTAACCACAAGCTGTACTCCCTGCAGCCCAAGCACAGGCTGTTCAGTCAGCACCCCACAGTGAACGACGAGCTGCCGAACCGGATCCTGTCGGGCCGGGTGCAGGTGAGGCCCAACGTGCGGGAGTTCCGGGGGGGGGCGGTGGTGTTCGAGGACGGCAGCGTGGAGGAGGGGGTGCACGCCGTCGTCTTCGCCACGGGGTACCGCTTCTCCTTCCCCTTCCTGTCCGACTCGGTGCTGCCCGTGCAGGACAACCGGGCGACCCTGTACAAGCACGTGTTCCCGCCCGCGCTGCAGCGCCACACGCTGGCCGTGGTGGGCCTGGTCCAGCCGCTCGGAGCCATCATGCCCATCGCAGAGATGCAGGCGCGCTGGGCCACCCGCGTCTTC
>TU184996
actgtGAACACGAGAATGGTGTAGTAATAACCCTGGGGGGCTGAAACCTGATCTGAGAGCATTGCCCCCCCTCACCGCCCGCTCCTCCCCCAGGGATCGAGACTTTCACAGGCAAGTACTTCCACAGCCGGGACTACAAGAGTCCCGAGGAGTTCAGAGGGAAGAGCGTGGTGGTGATCGGCATCGGCAACTCTGGAGGGGACATCGCTGTGGAGCTGAGCCACGTGACCGACAAGCTGTTCCTCAGTACCCGGCGGGGGGCGTGGATTCTGAACCGCGTGGGCGCGGGAGGCGTCCCAGGAGACATGCAGTTTGGCCGTGTGGCCAGGACGCTGCAGGGTGTGCTGCCCCTGGGCTTCTACAGCAGCCTGGGCGAGAAGCACCTCAACAGCAGGTTTAACCACAAGCTGTACTCCCTGCAGCCCAAGCACAGGCTGTTCAGTCAGCACCCCACAGTGAACGACGAGCTGCCGAACCGGATCCTGTCGGGCCGGGTGCAGGTGAGGCCCAACGTGCGGGAGTTCCGGGGGGGGGCGGTGGTGTTCGAGGACGGCAGCGTGGAGGAGGGGGTGCACGCCGTCGTCTTCGCCACGGGGTACCGCTTCTCCTTCCCCTTCCTGTCCGACTCGGTGCTGCCCGTGCAGGACAACCGGGCGACCCTGTACAAGCACGTGTTCCCGCCCGCGCTGCAGCGCCACACGCTGGCCGTGGTGGGCCTGGTCCAGCCGCTCGGAGCCATCATGCCCATCGCAGAGATGCAGGCGCGCTGGGCCACCCGCGTCTTCCAAGGTACGGCCTCGCTGCCACCGCC

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005351 True 819 mRNA 0.67 4 21966858 21969666
TU184996 False 811 TUCP 0.65 3 21968302 21969692

Neighbor

gene id symbol gene type direction distance location
AMCG00005350 NA coding upstream 29531 21932366 ~ 21937327 (+)
AMCG00005348 NA coding upstream 38385 21920884 ~ 21928473 (+)
AMCG00005349 LOC107687326 coding upstream 46961 21917115 ~ 21919897 (+)
AMCG00005344 NA coding upstream 88324 21873027 ~ 21878534 (+)
AMCG00005335 LOC106569412 coding upstream 208976 21756187 ~ 21757882 (+)
AMCG00005356 plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802 coding downstream 51170 22020862 ~ 22024488 (+)
AMCG00005358 NA coding downstream 54831 22024523 ~ 22031098 (+)
AMCG00005357 NA coding downstream 90517 22060209 ~ 22061467 (+)
AMCG00005364 NA coding downstream 146797 22116489 ~ 22122971 (+)
AMCG00005366 NA coding downstream 154090 22123782 ~ 22130249 (+)
G147027 NA non-coding upstream 9813 21956601 ~ 21957045 (+)
G147024 NA non-coding upstream 16271 21950328 ~ 21950587 (+)
G147022 NA non-coding upstream 18240 21948086 ~ 21948618 (+)
G146928 NA non-coding upstream 221407 21744879 ~ 21745451 (+)
G146915 NA non-coding upstream 254075 21710357 ~ 21712783 (+)
G147066 NA non-coding downstream 111952 22081644 ~ 22087344 (+)
G147025 NA other upstream 13976 21952569 ~ 21952882 (+)
G147021 NA other upstream 18867 21945558 ~ 21947991 (+)
AMCG00005345 NA other upstream 79290 21883199 ~ 21887568 (+)
G146952 NA other upstream 118722 21811732 ~ 21848136 (+)
AMCG00005340 ralgps2,LOC106531732 other upstream 262340 21680708 ~ 21704518 (+)
AMCG00005365 sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 other downstream 162873 22132565 ~ 22145610 (+)

Expression


Co-expression Network