AMCG00005359


Basic Information

Item Value
gene id AMCG00005359
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22086294 ~ 22087753 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005359
CTCAGTACCAGGAGATGCTGTCTCTGGACGTGGGGGATGAGGCCCAGCTGCACGCTGCCTTCCTCGCCTACCTGGACCTCACTGACGTGCGGCAGTGGCAGCAGgtgtccagcagggggagctCTGAGCTGCAGCTGGTGCTACTGGAGGGCCGTGAGGGGGAAGGTCAGCCCACACAGATCATTGTACCACTTCCGGGTCACAGGTCAATCAGCCACAAATGgATGCGCTCACTGCTGGCCCCCCCACACCCCGGTGCGCCGCCCCCCCCCGCAGTTCTGCTGTGTGCCGTGGCCTCCGACTCCAGCCTGGTCTACCACCGCCTGACCCCCGGCCTGGTGACCCCCGAGCCCCCCGACGTCATCATGGACCGGGGGCACCGGCAGCACCGCAAGAGACGCCTGCACTGAGGTTACGGGGTCAGCGCCGACTGGGTAACCTGGGGTCACGGGGTCAAGACCGGCCAGTTCAGCGAGTCAACACAGACTGGGTTACTGGTGCAGGTCAGCCGAGGTCATGGGCTCAACTGAGGCCACTGGAGGTCAACGTTGAGTCGGAGTGGACAGGGTCCAGGGTGGGGACAGTCCTGGAGACTGAATTGTGATGCAACTCCAgtgttatgttatttttttttaaataattttatccACGGAGGGGTGAGGGGAGCAGCCGGACCCCACAGTGGACTGTCCAAGCCGGGGGTCTCTGTCCTGACCGAGCGGCTGCCCCCCCCCCTTACGACCAGCGCTGACTGTGGCAGTGAATACCGACATGCTTGAATACACAGAATAAAGTCCCAGTTTAAAGCACTCTCTCATCAGTACTAATGAATGGGGTGTAGTTCCCTCTGTCCTCACCAGGGGGCACCAGAGCACATCCCAACTCTTCGTCACCGTCACGTGCTGCTCTTCCTGCCCCGAGCGTGGGGGCCGTGAGCCGCTTCCTGTCCCACGCTGCCGGGGAGCGAGGAGGGGGTCAACCCTTCCCTGCGCAGACGCGGTCCACAGGGCACTGCGGTCACTCTGCCCCCGAGGGACTGATCTGGACACAGATCACTCCATCACAGGGAGACGCACACAGTGAGGAGGAGACGGACAGTGAGACAGTCAGGGCATCAGTGTGTCAGACAGTGTGACAGTGAGACAGTCAGTGCGTCTGACGCTGCGAGAGAGcaggtcagtgtcagtgtcactCGGGCCGTCAGTAACCAGGCCCAGAGTCTCGGGTACAAACAGctcctgtgtatttttttttattttttattttaatagaaaaaaaat

Function

GO:

id name namespace
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0004519 endonuclease activity molecular_function

KEGG:

id description
K15324 TSEN15; tRNA-splicing endonuclease subunit Sen15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005359 True 1280 mRNA 0.60 3 22086294 22087753

Neighbor

gene id symbol gene type direction distance location
AMCG00005360 NA coding downstream 7467 22061733 ~ 22078827 (-)
AMCG00005361 NA coding downstream 90779 21982801 ~ 21995515 (-)
AMCG00005352 NA coding downstream 125793 21959594 ~ 21960501 (-)
AMCG00005353 NA coding downstream 129353 21937448 ~ 21956941 (-)
AMCG00005354 NA coding downstream 169995 21911879 ~ 21916299 (-)
AMCG00005367 edem3 coding upstream 16389 22104142 ~ 22112254 (-)
AMCG00005369 NA coding upstream 58033 22145786 ~ 22146079 (-)
AMCG00005368 imp3,LOC107709332 coding upstream 59294 22147047 ~ 22158405 (-)
AMCG00005382 fam78b,LOC106584378,LOC106613832,LOC105894228,LOC107717547,LOC103376640 coding upstream 128206 22215959 ~ 22223377 (-)
AMCG00005374 LOC103372724 coding upstream 275841 22363594 ~ 22368062 (-)
G146951 NA non-coding downstream 278988 21806980 ~ 21807306 (-)
G146891 NA non-coding downstream 479759 21589996 ~ 21606535 (-)
G146857 NA non-coding downstream 524833 21560049 ~ 21561461 (-)
G146813 NA non-coding downstream 704725 21381306 ~ 21381569 (-)
G146702 NA non-coding downstream 1228492 20857600 ~ 20857802 (-)
G147122 NA non-coding upstream 44513 22132266 ~ 22180932 (-)
G147156 NA non-coding upstream 141446 22229199 ~ 22229991 (-)
G147184 NA non-coding upstream 335236 22422989 ~ 22423230 (-)
G147185 NA non-coding upstream 337972 22425725 ~ 22426106 (-)
G147108 NA other downstream 1350 22083717 ~ 22084944 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other downstream 31327 22030825 ~ 22054967 (-)
AMCG00005363 NA other downstream 103773 21971035 ~ 21982521 (-)
AMCG00005343 NA other downstream 338496 21745544 ~ 21747798 (-)
G146938 NA other downstream 340841 21744876 ~ 21745453 (-)
G147121 NA other upstream 40154 22127907 ~ 22130549 (-)
G147124 imp3,LOC107671714 other upstream 57948 22145701 ~ 22158415 (-)
G147143 NA other upstream 107613 22195366 ~ 22198768 (-)

Expression


Co-expression Network