AMCG00005360


Basic Information

Item Value
gene id AMCG00005360
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22061733 ~ 22078827 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005360
gagggaggagtggagagagagggggggagaggccAGCCCTTCAACTCTGAGAGGAGAGCATTGGAAAGGCagcctccctcctccctccctcactctgcCGCTCCGCACTCCTCTGTCTCCTCAATCCCTCACTCTCAGCCAGGCTCGCACCCAGGGACCCGGGGAATCATGCCGACCGGCGGGGCTCTCTCTCTGGCGCTGGCGGCGGCGCTGCTCGGCTCCCTGCAGCCCCGGGCCGGTGCGGACCTGGTCACGCAGGTCCAGGAGGTTGTCCGGCCCGAGTCCGCGCTGATGCCGCCGAAAGTCATGATTGCAATCCTGGCCAGGAACGCGGCGCACAGCCTGCCTTACTACCTGGGCTGCATCGAGCGGCTGGAGTATCCCAAGGACCGCATCGCCATCTGCTCACGCTTCACCCACGTCATGAAGCTGCGCCAGGCAGCGCTGCGGGCAGCACGGGAGCGCTGGGCCGACTACATACTGTTCGTGGACAGTGACGTGCTGCTGACCAACCCACGGGTGCTGTCCCTCATGATAGCCGAGAACCTGACGCTGGCGGCGCCCATGATAGAGTCGCACACGCTCTACTCCAACTTCTGCGCGAGCCAAGCCCTGGCcttcaaccccccccacccccactacACCTGGGCCTATGATGACATCATGGTGTTCGCCTTCTCCGCCCGGCAAGCAGTCGACCACCCCCCCCTGGAGTCCTCACAGTACCTgcacaccccccccaccccccaggacAGGATGGGCTTTGACCAGatCTTCCTGATCAATCTGAGGCGCCGGTTGGACCGCAGGGACAGGATGCTGCGGACACTGTGGTGGAGCAGGGGCTGCGGCACGCACTGGTGCTGGAGGACGATctaTATAGGCCGTAAGCGGATGCAGGTGCAGCAGCCGGAGGTGTCCGTTCCGGGTGTCAGCAACCTGGTGGAGGCCGACTACTCGTACTGGACGCTGGGCTACGCGCTctccgAGTACATGCAGCAGTTCCCGGTGCGTGACCTGCGGGCATTCTCCGTGGAGCCCCTGCTGGTTTACCCCACGCACTACACGGGAGACACGGGCTACGTGAGCGACACTGAGACCTCCACCATCTGGGACGACGAGTCGCGGCTCACGGACTGGGACCGCACGCACGCCAGTAAGACCGGGCAGCAGGAGCGGATCAGCACCGCGGCGCAGAACAGCGTGACCGGCGCCCAGCCCCCGCCCGGCCCGGCCCCGGCGCCTGGCCACACCCCCTCCGCCACCACCACCCGAGATGAGTTCTGACACagtgacacgcacacacagtgacacgcacacattcacacacagttacacacacacacacacacacacacactgttacacactcCTATAGCGTGGCAGCAGGGCTGAACTGTGTCTGTGATCGCCGCGGCAGGAAGTGAACAcagtgacccctgacccctccAGACACAGACCCGACCCCTGACCCCtctggacacacacactcctttatttattctgcTGTATCCCTcattctctgtgtctgtgctggagGGGCGCTGGCTACTTGACCACCTGGACTGGGGGCTGGGAGAGACTGGGGAAGGGATTAATTTGAGATACTCTtgctcataataataatgttgacaGACGGGTGTGGTGTGTGGGCCTGGGGGGGCACAGGCAGGTCCTGTGTGCAGGTCACTGAGGTCACGCACTGAGGTGTGTCGGGGGCATTGAGGGTGAGTGGGGGATGAGGGGTGGGCAGCGCTCTCTCTGACACTGGCTGACTGACCGCCCCATCACTCTCACCTGCCAGCCTGCACACCTGTCTGTCCATCtttcctgtctgcctgtccctctgtcctctcCGCACGTCCTGTGACTGGATCACACTCTTGCATTCTCTACCCCCCTCCTGCGGGGACTTCTGATGGGCCCGAGACTCAGCGACATCTGAACCGGCTCCTCCACTGGACAAAACGTTTCTGTGACCGTGTCAGTAAAACCGTTGCATCCATTccggtctgtgtgtctgtatctgtgtgtctgcatgaaCGTCTGCGTGTCTGcatgtgtgcctgtgtttgtatgtgtgcctgtgtgtgtctgaatgtgtgTCCGTGTGTTGGCATGTGTGTATTTGGGGATCTGTGAAtctgagagggagagtgagagagacaggctGCAATGCCTTCTGCAGGCCACTCCCTGCACTGCACCCCTCTGCCAGACCCTgagcgtgtgtgtttgtgtgtcagtgtgtctcacggcctgtttctgtgtgtttgtcagtgtgtgtgtgttggattaTCAGTGACTACCTTACGACACCCTCCCACGGCTCAGCCAGTCCCCACAGTACCGACAGCACGCTGCTACACGTACAGCACGGGGCCCCTGGGTGTCACTGCTGCTCCGTGTCCTGCATAGCCACTGTGGCCCCTGCCCCCAACAGGGCTGTGTCACTCTGGGAAGAGTCTGAGAGCCTGTTTATGTCAGTGAATGTCTTCTGAGTTTCCTTGAAAGCACACAGAACTGATACGTGATACAGTGCGatgcaatgtttttgaaaatcctttttaaagaaagttttattttgtatttttgtgtaaaagtcaatgcaatgtgtttgtttaatgaagAGAAAATGATAGTTGGTA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005360 True 2648 mRNA 0.60 9 22061733 22078827

Neighbor

gene id symbol gene type direction distance location
AMCG00005361 NA coding downstream 66218 21982801 ~ 21995515 (-)
AMCG00005352 NA coding downstream 101232 21959594 ~ 21960501 (-)
AMCG00005353 NA coding downstream 104792 21937448 ~ 21956941 (-)
AMCG00005354 NA coding downstream 145434 21911879 ~ 21916299 (-)
AMCG00005355 NA coding downstream 151447 21891314 ~ 21910286 (-)
AMCG00005359 NA coding upstream 7467 22086294 ~ 22087753 (-)
AMCG00005367 edem3 coding upstream 25315 22104142 ~ 22112254 (-)
AMCG00005369 NA coding upstream 66959 22145786 ~ 22146079 (-)
AMCG00005368 imp3,LOC107709332 coding upstream 68220 22147047 ~ 22158405 (-)
AMCG00005382 fam78b,LOC106584378,LOC106613832,LOC105894228,LOC107717547,LOC103376640 coding upstream 137132 22215959 ~ 22223377 (-)
G146951 NA non-coding downstream 254427 21806980 ~ 21807306 (-)
G146891 NA non-coding downstream 455198 21589996 ~ 21606535 (-)
G146857 NA non-coding downstream 500272 21560049 ~ 21561461 (-)
G146813 NA non-coding downstream 680164 21381306 ~ 21381569 (-)
G146702 NA non-coding downstream 1203931 20857600 ~ 20857802 (-)
G147122 NA non-coding upstream 53439 22132266 ~ 22180932 (-)
G147156 NA non-coding upstream 150372 22229199 ~ 22229991 (-)
G147184 NA non-coding upstream 344162 22422989 ~ 22423230 (-)
G147185 NA non-coding upstream 346898 22425725 ~ 22426106 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other downstream 6766 22030825 ~ 22054967 (-)
AMCG00005363 NA other downstream 79212 21971035 ~ 21982521 (-)
AMCG00005343 NA other downstream 313935 21745544 ~ 21747798 (-)
G146938 NA other downstream 316280 21744876 ~ 21745453 (-)
AMCG00005333 NA other downstream 574022 21485949 ~ 21487711 (-)
G147108 NA other upstream 4890 22083717 ~ 22084944 (-)
G147121 NA other upstream 49080 22127907 ~ 22130549 (-)
G147124 imp3,LOC107671714 other upstream 66874 22145701 ~ 22158415 (-)
G147143 NA other upstream 116539 22195366 ~ 22198768 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G400530 NA non-coding CI01000258 null 119312 ~ 122131 (+)