AMCG00005362 (rgl1,LOC107657943,LOC107750730,LOC107717560)


Basic Information

Item Value
gene id AMCG00005362
gene name rgl1,LOC107657943,LOC107750730,LOC107717560
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22030825 ~ 22054967 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005362
CCTCCGGAGAGCACAGAGCTGAGCTCGGGGACAGACTGTGGGGAGAACACTGAGGCACTGGGACCAGTACACAGACCAGACAGAGACTGGGAGAGACACTGCACAGGACAGACAGGGACACGAGGACACATTGCACGCAGCACTGGGAATACTGGGACACAGACTGGGAGCACAGCCCGGGGGGACCGGCACACGGTTGGGCCCTCCTGGACTGTAAGCAGCGCGCAGGGAGAGGAAACGGAGACGCCACGGACTGAGCACTGGGATCACAGACGCAGGGAAAACACTGGGAACAGTGGGGGACCCGGACACAGCGGCTGGACAGAGGGACCGCAGGCACTGAGGGGTCGGGCAAGCCGTGCCCCCGGACCCTCCGCCGCCATGATCTCGCACTACCCCCTGGCCTCCCTGCTGCCCTGGCCCCCTAGCGCCCCCCACTCCCCCGGCCTGGGCCTGGAGTTGCTGGGCGGGGGCAGCGGCGGCGTGTTGCTGCAGAGGTACCAGCCCCGATCCCCGGACAGCGTCCCCCGGCACTGGAGAGAGGCGGAGCCACGGCCATTGAGTAACGGAGcgcagagagaaagaaaaagtgtcaaagacagaaaagagacagagacCGAGGCAgaggggaaggaggagagaTCTGTGACGgggtgtgtgtgcagtacagaGAGGGAGGGCTCAGCGGCTCTAGCAGTCCAGCCAGCGCTGCTCCCACACCGGATTACAAACGGAGTCGACTCGGGACGGGAGTTCTGCCGGAGCCGCAGGGGAGAGACAGGGACCCGGGTCCGATGCGCCGAGCGTGTCATGCGGGAGGCGCTCGCCATGCGGTTCGCCTGGAGAGCTAAGAtgGCCGAGGGAGACCGGCTGCCCCCCGGCCACACGGTCAGCCAGCTGGAGACGTGCAAGGTGCGCAGTATCCGGGCGGGCACCCTGGAGCGGCTAGTGGAGACGCTGCTGACCGCGGTGGGGGACAATGACCTCACCTACGCCAGCATCTTCCTGTCCACCTACAGGGCCTTCAGCTCCACCGGCACCGTGCTGCGGCTGCTACTCAACAGgtttgGCAACGAGGCGGAGGACATGGGGCCCCCCAGCCCCACTGACAGCAGAGGAGCTGTGCGCAACGCCCTGGCCTCCACCCTGCGCGCCTGGCTGGACCAGTGTCCCGAGGACTTCCAGGAGCCGCCCGACTACCCCAGCCTGCGCAGCGTGCTCGGCTACCTGCAGAGGGCGCTGCCGGGGTCGGAGACAGAGCGCCGGGCACAGAGCCTGCTGGAGCAGCTGCAGAGACAAGCCGACACGGAAGCCgaggGCACTTTCCACCGCAATGGCAGCTTCTGTctgggggaggaagaggaagtggaGATCGAGGGTTCCGAGGACTTCCTGTCCTTCAAGGCTGACCTGGTGGCCGAGCAGCTGACCTTCATGGACGCTTTCAACGCCGTGGCGGGCTGCGTGGTGGGCACCGTGCTGCGGCCCCGGCAGCTGCGCCCGTCCGCCCGCGCCCGCCTGCTGGAGCGCTGGATCGACATCGCGCAGggacaGCATGGCCATCACAACAACTACCTGACCAGCCGGGAGCTTCTGATGAAGgAGGGGACCTCGAAGTTTGCCAGTGTGGAGAGCTGTGTGAAGGAGCACCAGAAACGCACCCACAAGAGACTGCAGCTGCAGAAGGacatgGGTGCCATGCAGGGCACAGTGCCGTACCTGGGCACCTTCCTGACTGACCTCACCATGCTGGACACTGCGCTACCGGACTATGTGGAGGGAGGTCTGATCAACTTTGAGAAGAGACGCAGGgagTTTGAGGTGATCGCACAGATCAAACTGCTCCAGTCGGCCTGCAACAGCTACTgcttgacctctgaccctgccTTCCTGCGCTGGTTCCGCAACCAACCGCAGCACAGCGAGGAGGAGAGTCACACGCTGTCGTGTGAGATCGAGGCTGTGGCGGACGGCAGCTCCACCTCCCCCAAACACCGCAAGAGCATGGTACAGaccctgagagagaggcagagagacggAGCCCTGCTGGACCGCTATGTGTCCGTGTTAACCCCACCCTCTCTGCCCCCCCAGCTCTCCCTGTCGTCCTCCTGCTCGTCTCTGCACTCCATGGACACGTCCTCGTCCTCGGCCAGCAACTGTCCGCTGCCGCCCCCCCCCTCGACCTCGCTGCCCTCCCCTCCGCCCATGCCCCCCCCCCGCGGGCACCGCCGCTGCTGCTCTATTCAGGATAAGACCCCCGCAGTGATCGTGCGTGCCATGACCAAACACAACCTGGACGGGGAAGCGGCGGACAGCTACGAGCTGGTGCAGGTCATCTCAGAGGACCGAGagcttGTGATCCCGGACAATGCGAACGTGTTCTACGCCATGAACAGCTCGGCCAACTTCGACTTCGTGCTGCGTCTGCGTGGGTCTGCGGGCCGGCCGGTCCAGCTGCGCAGCCGATGCAGCTCCACCCTGCCCCGTGGCCCCCGGCACAGCGGCCCGAgtctgcCTGTGCCGAGAGAGGAGgatgagaagagagagagagagagagtggagtcCTCACTTGTTACCTCAGCACTTCCAACCCGAGCACAAGACCCCCTCCAGCTCCTCACTCGGCCAGCACCCCCCCAGCTGGGATGTTTTGCACCTCctgcccccccagcccctctGCCAGTACCTCCTGTTTCCTTCACTTCaatgaagaagaaggaggaggaggaagaggagaagaagagaCGACTGCCAGACTCCGGAGGGCCGCGTGACGGACCCTCAAATCAAGAGTCTGCTGCacactgggagagagggaggagcgagagaaggagggagggaagggaggaGGCACTAATAGGGAAgcgagagaaggagagaagtggttgtgagggagggagagaaggagtaAAGGGAAAGGTAGGAAGGgaaggaggaggcagcaagagggaggaggagggtggaaagaaagaaagagagagggagagggccgGGCTTCCGGGGGGCGTTCTGCGCACACTGGTTCTGTGTCACGGGGACAGACGGGCTCGTGACGGAGTCCTGGACGAGTGTGTTGTTTGGGGTCATCTCAAATTGCTGCCCAGTGAGGAGACAACCGAGCAGGGAGTCCGTCCTGAGCACAGGGAGACTGTTGAAGCTGCGGCCCCCGACCCTCCACAG
>TU185101
TCGCCCGGGCTGCTCCCCCCCGCCTACAACATCCAGAGCCAGGACTCGTGTATCGTGCGGACCAGCCTGGAGCAGGGCAACGGCAACCTGTACCGGAGCATAGtgCTGACCAGTCAGGATAAGACCCCCGCAGTGATCGTGCGTGCCATGACCAAACACAACCTGGACGGGGAAGCGGCGGACAGCTACGAGCTGGTGCAGGTCATCTCAGAGGACCGAGagcttGTGATCCCGGACAATGCGAACGTGTTCTACGCCATGAACAGCTCGGCCAACTTCGACTTCGTGCTGCGTCTGCGTGGGTCTGCGGGCCGGCCGGTCCAGCTGCGCAGCCGATGCAGCTCCACCCTGCCCCGTGGCCCCCGGCACAGCGGCCCGAGTCCCCGCGGCAAAGTCATCCtgtgaggtctgcCTGTGCCGAGAGAGGAGgatgagaagagagagagagagagagtggagtcCTCACTTGTTACCTCAGCACTTCCAACCCGAGCACAAGACCCCCTCCAGCTCCTCACTCGGCCAGCACCCCCCCAGCTGGGATGTTTTGCACCTCctgcccccccagcccctctGCCAGTACCTCCTGTTTCCTTCACTTCaatgaagaagaaggaggaggaggaagaggagaagaagagaCGACTGCCAGACTCCGGAGGGCCGCGTGACGGACCCTCGTGCGTTCTGATTGGCTCCTGGGGGGTAGAAGTCACGGGTTCATGAACTCTCCCCATTTCCTGTTGACATGTGAGCACTTCCTGGGTGAAAGGACGCTGAATGGCTGTGTGATGTGATGTCCCGCCCCGGAGACCTGCTGATGTCCAGTAGGGTTGCACTTCAGTAtgttgtgtgtgcgtttgtttatttgtgttctgGGTCCGGATTGGGGGTCTCGACACCCCTCTTCCCCTGAGATGTTTGTCCTCGTTCGCTTTGCCCGTCGacatcacaaacaaaacatgatttatgtCCAGAAAAGATAGTGGTTTGAAAAAGAAATCAAGAGTCTGCTGCacactgggagagagggaggagcgagagaaggagggagggaagggaggaGGCACTAATAGGGAAgcgagagaaggagagaagtggttgtgagggagggagagaaggaGGAGGCACAGCCGACAGCTGCTcagaacaacagaaaaagggaaaggaaGGGAGTGTGGGTaacagagagaaggaggagggggtCTGCAGCAGTGcgtctccgtctctgtctcagtgtctgtctgtggggCGCTGCTCTCTGCTGCCCCTCAGGGCTGGGGCGTGTAGCGCAGGTACTTCTTCCCCGACGGCAGGTCCTTCACAAAGACCCCTGAGGGGAACATTTCTGCCGCCTCCTCCTCCGCGACGTTGGGCAGCACCATCACTCGATCGCCGGGCTGAGGGGTTCACCATTCATTCCAGTTAGCACCGGTTTAATTTCCCTCGTTTCTATTGTCTAactcaggggttttcaaaccggtcctgcagaaccctctgccctgctgggttttgtttcaacagaggtcttaattgcttaattga

Function

symbol description
rgl1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RGL1 (ral guanine nucleotide dissociation stimulator like 1).

NR:

description
PREDICTED: ral guanine nucleotide dissociation stimulator-like 1 isoform X3

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005362 True 3183 mRNA 0.64 21 22032936 22054967
TU185101 False 1545 TUCP 0.58 5 22030825 22035272

Neighbor

gene id symbol gene type direction distance location
AMCG00005361 NA coding downstream 35310 21982801 ~ 21995515 (-)
AMCG00005352 NA coding downstream 70324 21959594 ~ 21960501 (-)
AMCG00005353 NA coding downstream 73884 21937448 ~ 21956941 (-)
AMCG00005354 NA coding downstream 114526 21911879 ~ 21916299 (-)
AMCG00005355 NA coding downstream 120539 21891314 ~ 21910286 (-)
AMCG00005360 NA coding upstream 6766 22061733 ~ 22078827 (-)
AMCG00005359 NA coding upstream 31327 22086294 ~ 22087753 (-)
AMCG00005367 edem3 coding upstream 49175 22104142 ~ 22112254 (-)
AMCG00005369 NA coding upstream 90819 22145786 ~ 22146079 (-)
AMCG00005368 imp3,LOC107709332 coding upstream 92080 22147047 ~ 22158405 (-)
G146951 NA non-coding downstream 223519 21806980 ~ 21807306 (-)
G146891 NA non-coding downstream 424290 21589996 ~ 21606535 (-)
G146857 NA non-coding downstream 469364 21560049 ~ 21561461 (-)
G146813 NA non-coding downstream 649256 21381306 ~ 21381569 (-)
G146702 NA non-coding downstream 1173023 20857600 ~ 20857802 (-)
G147122 NA non-coding upstream 77299 22132266 ~ 22180932 (-)
G147156 NA non-coding upstream 174232 22229199 ~ 22229991 (-)
G147184 NA non-coding upstream 368022 22422989 ~ 22423230 (-)
G147185 NA non-coding upstream 370758 22425725 ~ 22426106 (-)
AMCG00005363 NA other downstream 48304 21971035 ~ 21982521 (-)
AMCG00005343 NA other downstream 283027 21745544 ~ 21747798 (-)
G146938 NA other downstream 285372 21744876 ~ 21745453 (-)
AMCG00005333 NA other downstream 543114 21485949 ~ 21487711 (-)
G146618 NA other downstream 1420182 20609354 ~ 20610643 (-)
G147108 NA other upstream 28750 22083717 ~ 22084944 (-)
G147121 NA other upstream 72940 22127907 ~ 22130549 (-)
G147124 imp3,LOC107671714 other upstream 90734 22145701 ~ 22158415 (-)
G147143 NA other upstream 140399 22195366 ~ 22198768 (-)

Expression


Co-expression Network