AMCG00005363


Basic Information

Item Value
gene id AMCG00005363
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21971035 ~ 21982521 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005363
ATGGCTCGGCGCATTGCGATCATCGGCGGGGGCAGCTCGGGGCTGGCCTGTGTAAAGTGCTGCCTGGACGAGGGGCTGGAGCCGGAGACCCCCGAGTCGGACCGGGCCAGTATCTATCACTCTGTCATCATCAACACCTCCAAGGAGATGATGTGCTTCAGCGACTTCCCGATCCCGGCTCACTTCCCCAACTACATGCACCACTCGCTTATCATGGACTACTTCCGCATGTACGCCGAGCACTTCCAGCTGCTCCCGCACATCCGCTTCCAGGTGAGAGGCCACCAGGGACCCCATCTGCTTCGCACAACACCTCCCAGTGCCCCCGTGTAA
>TU185079
TTACAAAGCCTACTTTGGACAGGTTGCAAAAAGTCACCAAACTGAGCTGTGCTCTCCTGTGTTGAAGTTCATCAGGTTTGAATCTCTCTCCATTTGGTAAAAAGCCAAAGTAAAGTCAGCTGTGGACAAAGTCTACCTGCGGCCATTGCAGTGGCCGGTGGGAGGATATGTAATGAAGCCAGACAGAGCAGGAACCCCTCACACAATATCTGTCCTGCCTCGCTGCGGAGATTGTTCTCGGACAAAAGCACAGTCACCATGGCTCGGCGCATTGCGATCATCGGCGGGGGCAGCTCGGGGCTGGCCTGTGTAAAGTGCTGCCTGGACGAGGGGCTGGAGCCGGTGTGCTTCGAGAGCAGCGAGGACATCGGGGGGCTCTGGAGGTTCAAGGAGACCCCCGAGTCGGACCGGGCCAGTATCTATCACTCTGTCATCATCAACACCTCCAAGGAGATGATGTGCTTCAGCGACTTCCCGATCCCGGCTCACTTCCCCAACTACATGCACCACTCGCTTATCATGGACTACTTCCGCATGTACGCCGAGCACTTCCAGCTGCTCCCGCACATCCGCTTCCAGacCCGTGTGCGCAGTGTGGAGCAGCGCCCTGACTTCTCTCAGTCGGGGCAGTGGCAGGTGgtcacagtggacagagagggGCGGGAGGAGAGCTCTGTGTTCGATGGCGTGCTGGTCTGCACGGGGCACCACGTCCACCCACACCTGCCCCTCCAAGACTTCCCAGGTGAGCTggg
>TU185082
TTACAAAGCCTACTTTGGACAGGTTGCAAAAAGTCACCAAACTGAGCTGTGCTCTCCTGTGTTGAAGTTCATCAGGTTTGAATCTCTCTCCATTTGGTAAAAAGCCAAAGTAAAGTCAGCTGTGGACAAAGTCTACCTGCGGCCATTGCAGTGGCCGGTGGGAGGATATGTAATGAAGCCAGACAGAGCAGGAACCCCTCACACAATATCTGTCCTGCCTCGCTGCGGAGATTGTTCTCGGACAAAAGCACAGGTGAGGCTTGTCCATGTGTGGCAGGAAGACTTAGTGTAGTGGACACAGGCAGTGTGGCTGAAGCACAGTCTTGCCTACGGGCTACTACTGATGTGTGGATATGATAGGAGCTTTGAACAGAGTGTAGTTTAGATCTGTGGGGCTGATCACACTGCTGTAACTGTGCTGTCTGCTGGGCGGG

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0031090 organelle membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005363 False 333 mRNA 0.61 2 21971423 21972456
TU185079 True 755 TUCP 0.58 4 21971035 21982521
TU185082 False 434 lncRNA 0.50 2 21982058 21982521

Neighbor

gene id symbol gene type direction distance location
AMCG00005352 NA coding downstream 10534 21959594 ~ 21960501 (-)
AMCG00005353 NA coding downstream 14094 21937448 ~ 21956941 (-)
AMCG00005354 NA coding downstream 54736 21911879 ~ 21916299 (-)
AMCG00005355 NA coding downstream 60749 21891314 ~ 21910286 (-)
AMCG00005346 suco coding downstream 109604 21845044 ~ 21861431 (-)
AMCG00005361 NA coding upstream 280 21982801 ~ 21995515 (-)
AMCG00005360 NA coding upstream 79212 22061733 ~ 22078827 (-)
AMCG00005359 NA coding upstream 103773 22086294 ~ 22087753 (-)
AMCG00005367 edem3 coding upstream 121621 22104142 ~ 22112254 (-)
AMCG00005369 NA coding upstream 163265 22145786 ~ 22146079 (-)
G146951 NA non-coding downstream 163729 21806980 ~ 21807306 (-)
G146891 NA non-coding downstream 364500 21589996 ~ 21606535 (-)
G146857 NA non-coding downstream 409574 21560049 ~ 21561461 (-)
G146813 NA non-coding downstream 589466 21381306 ~ 21381569 (-)
G146702 NA non-coding downstream 1113233 20857600 ~ 20857802 (-)
G147122 NA non-coding upstream 149745 22132266 ~ 22180932 (-)
G147156 NA non-coding upstream 246678 22229199 ~ 22229991 (-)
G147184 NA non-coding upstream 440468 22422989 ~ 22423230 (-)
G147185 NA non-coding upstream 443204 22425725 ~ 22426106 (-)
AMCG00005343 NA other downstream 223237 21745544 ~ 21747798 (-)
G146938 NA other downstream 225582 21744876 ~ 21745453 (-)
AMCG00005333 NA other downstream 483324 21485949 ~ 21487711 (-)
G146618 NA other downstream 1360392 20609354 ~ 20610643 (-)
AMCG00005276 pomgnt1 other downstream 1468829 20491051 ~ 20502206 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other upstream 48304 22030825 ~ 22054967 (-)
G147109 NA other upstream 54074 22036595 ~ 22101862 (-)
G147108 NA other upstream 101196 22083717 ~ 22084944 (-)
G147121 NA other upstream 145386 22127907 ~ 22130549 (-)
G147124 imp3,LOC107671714 other upstream 163180 22145701 ~ 22158415 (-)

Expression


Co-expression Network