AMCG00005367 (edem3)


Basic Information

Item Value
gene id AMCG00005367
gene name edem3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22104142 ~ 22112254 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005367
ATGGTGACTGTGAGGGGCCCCTGCCCTGGCAGCGccgccctgctgctgctgctgctcctgggGGCCCGCTGCCGGCCGGGGGCTGCCATGACGAGAGAGGAGAGACACCAGCTGAGGAATCAGGTGGTGGAGATGTTTGACCACGCCTTCCAGAGCTACATGGAGCATGCGTACCCCGCCGATGAGCTGATGCCCCTGACATGTCGAGGGCGGGTGCGGGGGCTGGAGCCCAGCCGGGGGGACGTGGACGACGCACTGGGGAAGTTCTCTCTGACGCTCATCGACACTCTGGACACTCTGGCGTTGCTGAACAAGCCGCTGGAGTTCGAGGAGGCCGTGCAGAAGGTGCTGAGGGACGTGCGTCTGGACAACGACATCGTGGTGTCCGTGTTCGAAACCAACATCCGAGTCCTGGGgggTCTGCTGGGGGGCCACGCGATGGCAGTGATGCTGAAGGAGGGGGGGCAGCACATGGGCTGGTACGGGGACGAGCTGCTGGGCATGGCCAGGGATCTGGGTCTGCGGCTGCTGCCCGCCTTCAACACGTCCAGCGGGCTGCCCTACCCCCGGGTGAACCTGCGCCACGGCGTGCGGGGTCCTGAGACACGGACAGGCACGGAGACGGACACCTGCACTGCCTGCGCCGGGACCATCATCCTGGAGTTCGCTGCCCTGAGCCGCTACACCGGGGAGCCCGTCTTCGAGGATCACGCCCGCCGGGCCCTGGACTTCCTGTGGGAGAAGCGGCAGAGAAACAGCAACCTGGTGGGAACGACAATCAACATCCACTCAGGAGAGTGGGTCCGCAGGGacAGCGGTGTTGGCGCCGGGATTGACTCGTACTACGAGTACCTGCTGAAGGCCTACATCCTGCTGGGGGACGAGCGCTTCCTGGAGCGGTTCAACATTcaCTACGCCTCCATCATGAAGTACATCAGCCAGCCCCCCCTGCTGCTGGACGTCCACATCCACAAGCCCCTGCTGACGGCGCGCACCTGGATGGACTCGCTGCTGGCCTTCTTCCCCGGCCTGCAGgtgttgAAGGGTGACATCCGCCCAGCCATAGAGACACATGAGATGCTGTACCAGGTGACCAAGAAGCACAACTTTCTGCCCGAGGCGTTCACCACCGATTTCCGTGTCCACTGGGCCCAGCACCCTCTCCGGCCTGAGTTTGCAGAGAGCACCTACTTCCTGTACAAGGCCACAGGTGACCCGTACTACCTGGAGGTGGGCCGCTCTGTGCTGGACAACCTGAACCGGTACGCCCGTGTGCCCTGCGGCTTCGCTGCCATGAAGGACGTCCGGACCGGCAGCCACGAGGAccgCATGGACTCGTTCTTCCTGGCGGAGATGTTCAAGTACCTGTTCCTGCTGTTTGCCGACCCCGAGGACCTGCCCTTCGACGTGGAGGACTACATCTTCACCACCGAGGCCCATCTACTGCCCCTGTCCCTGTCCACCACCAACCGCTCCCCCACACGGGCGGTCAACACCACGtcggGGGAAGCTGCCGTCTCGGACCTGGACGATTCAAACTTTGACTGGTCCTGTCCCAACACCCAGCTGCTGTTCCCTGACCCTGCCTTCCCGCGCTCCATCCGGGAGCCAATCAGGACCTCCGTGGATAAGAGCTGCCCGCGCCCCGCCCCCCGGGGtgATGGGGCGTCCCCGGGCCGCCCCCCGCTGCGTGCGCGGGACTTCATGGCAAGTAACCCGGAGCACCTGGAGCTGCTGCGGCGCATGGGAGTCAGCCTCATCCACCTGAAGGACGGCCGAGTGCAGCTGGTGCAGCACGCCACACAGGCGCAGAGCGCGGTGGATGCGGAGGACGGGCTGCGCTTCATGCAGGAGATGATCGAGCTGTCCAGCCAGCAGCAGAAGGAGCAGCTGCCCCCCCGCGCCGTGCAGATCGTCTCGCACCCCTTCTTCGGGAGAGTGCTCAGCAACGCCGCGCTGGTGGCCGGCCGGGTGGCGCTGCTGCAGAGGGGGAGCTGCATGTTCGCAGAAAAGGCCAGGAACCTGCAGAGAGCCGGGGCCATCGGGGGCATCGTCATCGATGACAaggagggcagcagcagtgacacGGCCCCGCTGTTCCAGATGGCGGGTGATGGGCGGAGCACGGATGACATCACcatccccctcctcttcctcttccacaAGGAGGGCACCATCGTACTGGAGGCTCTGAGGGAGTATCAAGAAGTGGAGGTGCTGCTGAGCGACAGAGCGAGGGACCgagCCTCcatatttaaagataaaacTCTGCCCAGCTACATCCTGGAGAGCAGCGGGGAGTCCGAGTGCGTTGAGGAAGAGGAGGGCGACTGCGCTGCCCAGGAGAGCGTCTCCCCTCCTGTCGCCACACCCACCGCCCACCCGGCCGCCGGCGCAGAGGAGCCGGACGTGGTGCTGAGCAGGGCGGGGCCTGGCCAGGAGGGCGGGGTGCTGGACACAGGGGAGGCGGAGCTGGGGGCGGAGTCAGACGCAGAGGCGGGCGGGGATTCCAGCGGCCAATCGATGGACCCCCTGCTGGCCGACTGGAAGGAGGACCTGGAGGCGTTCCAGCAGATGGAGAAGGACGAGCTCTGA

Function

symbol description
edem3 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process and mannose trimming involved in glycoprotein ERAD pathway. Predicted to be located in membrane. Orthologous to human EDEM3 (ER degradation enhancing alpha-mannosidase like protein 3).

NR:

description
PREDICTED: ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K10086 EDEM3; ER degradation enhancer, mannosidase alpha-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005367 True 2595 mRNA 0.65 21 22104142 22112254

Neighbor

gene id symbol gene type direction distance location
AMCG00005359 NA coding downstream 16389 22086294 ~ 22087753 (-)
AMCG00005360 NA coding downstream 25315 22061733 ~ 22078827 (-)
AMCG00005361 NA coding downstream 108627 21982801 ~ 21995515 (-)
AMCG00005352 NA coding downstream 143641 21959594 ~ 21960501 (-)
AMCG00005353 NA coding downstream 147201 21937448 ~ 21956941 (-)
AMCG00005369 NA coding upstream 33532 22145786 ~ 22146079 (-)
AMCG00005368 imp3,LOC107709332 coding upstream 34793 22147047 ~ 22158405 (-)
AMCG00005382 fam78b,LOC106584378,LOC106613832,LOC105894228,LOC107717547,LOC103376640 coding upstream 103705 22215959 ~ 22223377 (-)
AMCG00005374 LOC103372724 coding upstream 251340 22363594 ~ 22368062 (-)
AMCG00005375 trabd2a coding upstream 282060 22394314 ~ 22395422 (-)
G146951 NA non-coding downstream 296836 21806980 ~ 21807306 (-)
G146891 NA non-coding downstream 497607 21589996 ~ 21606535 (-)
G146857 NA non-coding downstream 542681 21560049 ~ 21561461 (-)
G146813 NA non-coding downstream 722573 21381306 ~ 21381569 (-)
G146702 NA non-coding downstream 1246340 20857600 ~ 20857802 (-)
G147122 NA non-coding upstream 20012 22132266 ~ 22180932 (-)
G147156 NA non-coding upstream 116945 22229199 ~ 22229991 (-)
G147184 NA non-coding upstream 310735 22422989 ~ 22423230 (-)
G147185 NA non-coding upstream 313471 22425725 ~ 22426106 (-)
G147109 NA other downstream 2280 22036595 ~ 22101862 (-)
G147108 NA other downstream 19198 22083717 ~ 22084944 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other downstream 49175 22030825 ~ 22054967 (-)
AMCG00005363 NA other downstream 121621 21971035 ~ 21982521 (-)
AMCG00005343 NA other downstream 356344 21745544 ~ 21747798 (-)
G147121 NA other upstream 15653 22127907 ~ 22130549 (-)
G147124 imp3,LOC107671714 other upstream 33447 22145701 ~ 22158415 (-)
G147143 NA other upstream 83112 22195366 ~ 22198768 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_03116123_03125761 EDEM3 coding CI01000010 null 3116123 ~ 3126609 (+)