AMCG00005368 (imp3,LOC107709332)


Basic Information

Item Value
gene id AMCG00005368
gene name imp3,LOC107709332
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22147047 ~ 22158405 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005368
GGCCTGGAGGGCAGCGGACATTTTGGAGTAGCGCTGCAGTGACTGCCGTAGTTTGCGTCgcgttgtgcagtgtgtgcagtattcAGTGGGTGCTCAGGGTACAGCCGGCAGCCATGGTGCGGAAGCTGAAGTTTCATGAGCAGAAGCTGCTGAAGAAGGTGGACTTCCTGAACTGGGAGGTGGACAACAACCTGCACGAAGTGAAGGTGCTGCGCAGATACCACATCGAGAGGAGGGAGGACTACACAAAGTACAATAAGCTGAGCCGCAGTATTCGGGAGCTGGCCCAGAAGATCCGGGACCTGAACGAGAAGGACGGCTTCCGAGCGCAGAGCACGGCGCGGCTGCTGGAGAAACTGTATGGCGTGGGTCTGATTCCCACCCGGGAGAACCTGGCGCTCACCGAGAAGGTCACCGCCTCCGCCTTCTGCAGgagGCGCCTGCCCAGTGTGCTGGTGAAGCTGCGCATGGCCCAGAACCTGAAGACCGCCGTGACCTTCATCGAGCAAGGCCGTATCCTCCCGCGCTCTATCGCTCCACTGTCACTCCATCACCCCTTCGCTCCGTCGCTATGCTACCACTCAGGACAGCGGGAGAGCAGGGGAGGGCAGGGCGGGAAGGGAAAGGACGGCAGAGTGGGGGTCCTTGACTCAGACCCAGATGTGCGCGTCGGACCCGAGATCATCACTGACCCTGCCTTCCTGATCACCAGAGAGGTGACAAGGTCAGGCTGTACCCTGTGGTTTGCCCCCCCCCTGTACTTCCTGTGTGTCCTGCCCGCAGAGCTCAGTCACGcaccgctgctgctgctgccatcCTTCCTCTTCTGCTGCTCCGTCCTCTTGCCCGGCACAGATGCTCATGGGCTCTCAGGTGTCACAGTAGCTGCCGACTCGGCGAGTATGGTGGCCCACTCTGACTGCTCCTCcttgtgtgtgcgtctcacCGCTCTGGTCCTGTCCTCTCGGTGA

Function

symbol description
imp3 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Orthologous to human IMP3 (IMP U3 small nucleolar ribonucleoprotein 3).

NR:

description
PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005368 True 971 mRNA 0.61 7 22147047 22158405

Neighbor

gene id symbol gene type direction distance location
AMCG00005369 NA coding downstream 968 22145786 ~ 22146079 (-)
AMCG00005367 edem3 coding downstream 34793 22104142 ~ 22112254 (-)
AMCG00005359 NA coding downstream 59294 22086294 ~ 22087753 (-)
AMCG00005360 NA coding downstream 68220 22061733 ~ 22078827 (-)
AMCG00005361 NA coding downstream 151532 21982801 ~ 21995515 (-)
AMCG00005382 fam78b,LOC106584378,LOC106613832,LOC105894228,LOC107717547,LOC103376640 coding upstream 57554 22215959 ~ 22223377 (-)
AMCG00005374 LOC103372724 coding upstream 205189 22363594 ~ 22368062 (-)
AMCG00005375 trabd2a coding upstream 235909 22394314 ~ 22395422 (-)
AMCG00005373 NA coding upstream 258515 22416920 ~ 22422016 (-)
G146951 NA non-coding downstream 339741 21806980 ~ 21807306 (-)
G146891 NA non-coding downstream 540512 21589996 ~ 21606535 (-)
G146857 NA non-coding downstream 585586 21560049 ~ 21561461 (-)
G146813 NA non-coding downstream 765478 21381306 ~ 21381569 (-)
G146702 NA non-coding downstream 1289245 20857600 ~ 20857802 (-)
G147156 NA non-coding upstream 70794 22229199 ~ 22229991 (-)
G147184 NA non-coding upstream 264584 22422989 ~ 22423230 (-)
G147185 NA non-coding upstream 267320 22425725 ~ 22426106 (-)
G147121 NA other downstream 16498 22127907 ~ 22130549 (-)
G147109 NA other downstream 45185 22036595 ~ 22101862 (-)
G147108 NA other downstream 62103 22083717 ~ 22084944 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other downstream 92080 22030825 ~ 22054967 (-)
AMCG00005363 NA other downstream 164526 21971035 ~ 21982521 (-)
G147143 NA other upstream 36961 22195366 ~ 22198768 (-)

Expression


Co-expression Network