AMCG00005376 (slc35a3,LOC108230529,LOC105011626,LOC106613831,LOC107393273)


Basic Information

Item Value
gene id AMCG00005376
gene name slc35a3,LOC108230529,LOC105011626,LOC106613831,LOC107393273
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22200185 ~ 22211145 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005376
AACCACACACTACTGCACAATGTCTACACTAACTACACACTACTGCACAAAGTAAACTAACCACACGCTACTGCACAGTCTACTCTAACCACACACTACTGCACAGTGTCTACTCTAACCACACACTACTGCACAATGTCTACACTAACTACACACTACTGCACAAAGTCTACACTAACTACACGCTACTGCACAATGTCTACACTAACTACACGCTACTGCACAATGTCTACACTAACCACACACTACTACACAGTGTCTACACTAACCACACACTACTGCACAGTGTCTACTCTAACCACACACTACTGCACAATGTCTACACTAACTACACACTACTGCACAAAGTACACTAACCACACGCTACTGCACAATGTCTACACTAACCACACTATATCCTATTGGTTGGTTCCCTCCCTCCACCTTTCCCCCGAAACAAGTTCGTTTTAGGAGGTTTTCAAGGTCGAGGGAAACACAAACACGCTGGGATTGACTGGCATTCctgtcaaatgtgttaatttttAATCTCGCCCTGTCCAGCTGCCCCCTGTCCCACtaagacaacacacacactcatcagAAGGGACCGGGTGCTGAGAGCAGAGAGTGGCATGGGGACCAGGCCTGAGCCGGACGCTCGCCCACCGCCCCGCGCCGCCCGGAGAGCCACCGCAGCGGGCAGAGCGACAGGAGCCGCGCCGGGACGGAGATCCGCAGACCGGtcgGTCCCTGCCACCTGCATGTCTTCCCGTCTGAAGTACGTGTCTCTGGGCGTCCTGGTGTTCCAGACCACCAGCCTGGTCCTGACGATGCGCTACTCGCGGACGCTGCAGGGGGACGGCCCACGCTACCTGGCCTCCTCCGCAGTGGTCTCCGCCGAGCTGCTGAAGATCGCCGCCTGCGTCCTCCTGGTCTTCAAGGAGCACAGCTACAGTGCTCGTGCCCTGAACCGTGTGCTGAGTGATGAGATCCTGAACAAGCCACTGGACACGCTGAAGCTGGCCATCCCCTCGGGCATCTACACGCTGCAGAACAACCTGCTGTACGTGGCGCTCTCCAACCTGGACGCCGCCACCTACCAGGTGACGTACCAGCTGAAGATCCTGACCACGGCGCTGTTCTCCGTCGCCATGCTGGGCCGGCGCCTCAATGTGTACCAGTGGCTCTCGCTGCTCATCCTGATGGCGGGGGTGGCCCTCGTGCAGTGGCCCTCAGAGGCCCCGGGCGTGGAACAGCAGAAGGAGCTGTCTGCCGGCTCTCAGCTGGTGGGCGTTGGGGCAGTGCTGGTGGCCTGCTGCTCCAGCGGCTTCGCGGGCGTCTACTTCGAGAAGATCCTCAAGGAGACCAAGCAGAGCGGCTGTTCGGCGCCGTGTTCGGGCTCATGGGGATGTGGCGTGTTCTTCCTCGGCGCCATCCTGGTTATCGCTGCCACCTTCCTGTACGGCTACGAGGGCAAGCCGGCCGCCAACCCCAGCCGCGCGTAGAGAGGGCAGGTGGATGGGCGGCGGGCAGGCGGGCAGGTGTGCGGGGGGGGACCTGTGcggagagcaggaggaggacACCCCCAGACAGTGGGTCCACCCCACCTGGACATGAGACCGGCCGACCCACTTGCTGTGTCTGAGCCGAAAATGAACTGTACCCCCCACCACGGGGGGCCGAAAGACTCCAGCGCAGACACCGTCcatctgccccccccccctcttccgCAAGTCCGTCTTGCAGAGTGTTTAaatggtggtgggggtggggggaggggggtctaTATGCAGGTCAACTTtttgggaaattattattttattgttattatttattttttttatttgggagAACCAGGTCAGTCAGTCTGTATCGGACCCCCCCGCTCTCCTTGTCTGTAGTGAATCATTATAATAAGGCAGGCGAGGGGGGGGCAGAATGAGCTTTACACCGAAAACAAGGTGTTGCTCAActgactggggggggggggtccggTCCCTCGGCGCCGGTACTGGGGGCAGAACGGGCCGGACGGATGGTGCCAAGTGGCCCGAACACGACTGGGGTTATTAAGAGTTCAAAtcatgtcatattttatttgattgtattaatattagttattatttgggaggggggttgtgttgttttattgccaAGTC

Function

symbol description
slc35a3 Predicted to enable UDP-galactose transmembrane transporter activity. Involved in UDP-N-acetylglucosamine transmembrane transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi apparatus. Predicted to be integral component of Golgi membrane.

NR:

description
PREDICTED: UDP-N-acetylglucosamine transporter-like

GO: NA

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005376 True 2138 mRNA 0.57 9 22200185 22211145

Neighbor

gene id symbol gene type direction distance location
AMCG00005378 NA coding upstream 1444 22181664 ~ 22198741 (+)
AMCG00005381 NA coding upstream 21809 22175486 ~ 22178376 (+)
AMCG00005370 NA coding upstream 67703 22130285 ~ 22132482 (+)
AMCG00005366 NA coding upstream 69936 22123782 ~ 22130249 (+)
AMCG00005364 NA coding upstream 77214 22116489 ~ 22122971 (+)
AMCG00005377 NA coding downstream 13427 22224572 ~ 22229979 (+)
AMCG00005379 NA coding downstream 33159 22244304 ~ 22245551 (+)
AMCG00005380 NA coding downstream 48960 22260105 ~ 22261178 (+)
AMCG00005371 NA coding downstream 211844 22422989 ~ 22429677 (+)
AMCG00005372 NA coding downstream 218968 22430113 ~ 22435540 (+)
G147066 NA non-coding upstream 112841 22081644 ~ 22087344 (+)
G147027 NA non-coding upstream 243140 21956601 ~ 21957045 (+)
G147024 NA non-coding upstream 249598 21950328 ~ 21950587 (+)
G147022 NA non-coding upstream 251567 21948086 ~ 21948618 (+)
G146928 NA non-coding upstream 454734 21744879 ~ 21745451 (+)
AMCG00005365 sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 other upstream 54575 22132565 ~ 22145610 (+)
G147029 NA other upstream 216041 21957440 ~ 21984144 (+)
AMCG00005351 NA other upstream 230493 21966858 ~ 21969692 (+)
G147025 NA other upstream 247303 21952569 ~ 21952882 (+)
G147021 NA other upstream 252194 21945558 ~ 21947991 (+)

Expression


Co-expression Network