AMCG00005377


Basic Information

Item Value
gene id AMCG00005377
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22224572 ~ 22229979 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005377
ATGCTTTTCCGTATCAGCCGTGTTCGCGCCCGCCCCCTGCTGGAGATCCAGCAGTACTGCGTGTCTGTGCTGTCCGAGGTGGCACCGATATCCTTTATGGCAGGAGCTCTGGGGCCACACAGGCCTGTCCCGACACTGGCTGGCCAGcagcTCTGCCGCCACTCCGGAGTCGCCGCTCGACCTCGGTTTATGCTTTTCCGCCTGCTGAGCTCTGTGTCCCGCAAGGCGTCCTCCGTGCTGTTCCGAGCGCCCGTCGCCATGAAGCCCCAGGTCGTGTTCGTGCTGGGCGGCCCCGGCGCCGGGAAGGGAACCCAGTGCGCCAAAATCGTGGAGacctATGGCTACACCCACCTCTCCGCGGGGGACCTGCTCCGTGCCGAGCGCGCACGGCCAGACTCCAAGGATGGTCAGCTGATCGAGAGCTACATCAAGGAGGGCAAGATCGTCCCTGTGGAGATCACCATCAACCTGCTGAGGAaggtgtgtgtctgcctgtgtgatgcctgtgtgtctgtctctcatgACCCCCTTGACctgctgacccctgacccccagGCCATGGAGGAGACCATGCGGCAGGACCAGGAGAAGTTCCGCTTCCTGATCGACGGCTTCCCGCGCAACGAGGACAACCTGCAGGGCTGGACTAGCGCCATGCGGGAGCGGGCGGACGTGCGCTTCGTGCTGTTCTTCGACTGCAGCAACCAGGTGTGCATCGATCGCTGTCTGGAGCGCGGCAAGAGCAGTGGCCGCACCGACGACAATCGCGAGAGCCTGGAGAAACGGATTCAGACCTACCTGCAGTCCACCAGGCCCATCATCGACCTGTACATGAAGCAGGGCAAGGTGCGCACCGTGGATGCCTCCAGGGGTGTCGAAGAGGTGTTCAGTGATGTTCGGAAGGTGCTGGACCAGGAGGTGTAGAGATGACAGGACGCCGCCGGCTCCCCCACAGGAACACGCACTTCTGCTTCTTTTAAAACGACAGCAACACAAAAACTGACACTCGAGAAAACAGAAACACCCCACCTTGTATCTATATCATTATTATcgttattgttatcattattatttcctttttttactgGCTCGGATggctctgtttttaaatgtcgtGTGCTTCAGTGTGGATGTGCGTCTGCTGTCCCCTGCTGGCGCTCAAACAGACACTGACTGCCGCTTCCTGCTGGGGAGAGCCGGGGCGGTGCTCGTGGTGTCAGCCCGGCCCGGCATGTTTTGGCGGAGAGTCCGACTCGGCGGGAGCGCAGCGTCGCGGATTAgggttttgtttaatctgttttactgttgttcctttttgtgttttttgtcctCCAACAGCTCctcccagacacacacagaggtggGGGGTGCGGTCGGGCTGAGCCCCCCCCACACTGACCGCACTCCCCACCTCTGTCAGGGGGTTTATCATTCCACCCGAATCGAATCTCCCGGGGTTCTGTCTAATGCAGGTGACGGTTTCATTTTAACAGCTCTGTGAAATAAAgcagacccccccccccggccccgTGTCTCTGTAGCGCCCCCCTCTGTACCCGTGTGTTTTTCCATGTTGTCTTGATGAAACGTTTCAAAGGACCAGTGTGTTTGACTTGAAAGGCtccttctgtttttaaatgaacacgGAGATGAATTACACTTG

Function

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K13800 CMPK1, UMPK; UMP-CMP kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005377 True 1663 mRNA 0.58 6 22224572 22229979

Neighbor

gene id symbol gene type direction distance location
AMCG00005376 slc35a3,LOC108230529,LOC105011626,LOC106613831,LOC107393273 coding upstream 13427 22200185 ~ 22211145 (+)
AMCG00005378 NA coding upstream 25831 22181664 ~ 22198741 (+)
AMCG00005381 NA coding upstream 46196 22175486 ~ 22178376 (+)
AMCG00005370 NA coding upstream 92090 22130285 ~ 22132482 (+)
AMCG00005366 NA coding upstream 94323 22123782 ~ 22130249 (+)
AMCG00005379 NA coding downstream 14325 22244304 ~ 22245551 (+)
AMCG00005380 NA coding downstream 30126 22260105 ~ 22261178 (+)
AMCG00005371 NA coding downstream 193010 22422989 ~ 22429677 (+)
AMCG00005372 NA coding downstream 200134 22430113 ~ 22435540 (+)
G147066 NA non-coding upstream 137228 22081644 ~ 22087344 (+)
G147027 NA non-coding upstream 267527 21956601 ~ 21957045 (+)
G147024 NA non-coding upstream 273985 21950328 ~ 21950587 (+)
G147022 NA non-coding upstream 275954 21948086 ~ 21948618 (+)
G146928 NA non-coding upstream 479121 21744879 ~ 21745451 (+)
AMCG00005365 sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 other upstream 78962 22132565 ~ 22145610 (+)
G147029 NA other upstream 240428 21957440 ~ 21984144 (+)
AMCG00005351 NA other upstream 254880 21966858 ~ 21969692 (+)
G147025 NA other upstream 271690 21952569 ~ 21952882 (+)
G147021 NA other upstream 276581 21945558 ~ 21947991 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G138948 LOC106675582 non-coding NC_053124.1 CM020921.1 35403441 ~ 35549974 (-)
mexican tetra (Astyanax mexicanus) G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding NC_035912.1 CM008315.1 2522526 ~ 2529626 (-)