AMCG00005379


Basic Information

Item Value
gene id AMCG00005379
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22244304 ~ 22245551 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005379
ATGAATCTGGCGAGCTTCTCTTACTTTCCGGGCATGTGCAACATGACGGCCGAGTGCCAGCACTCCCCCCCCGAGGCGGGCAGCCCGCTGGGAGTCTCGCCCAACGTCAGCCTGGACTCCCCGGCGCCGGGCCGGGCGAAGGACGGGGTGCTGAGGTTCAAGCGCACGGATGTCAGCACCTACCCGGGCTACATGCAGAACTCCAGCGCCTTCACCCCGACCCCGGTGGGTCGCCCATCCTACCCCAACACCCTGTACCCGGGCATGGGGACGGGCTACGCCCCGCAGATCGGGGGCTCCCCTCACCCCGCCATGCTGCACCACTACCAGAGCTCGGCCGGACACGGCCAGCACAGGATGTTCAGCATCGACAACATCATCAGCCAGCAGTCGGTGATGCAGTCCGGCCCGGCCGCAGAGCTCAACCCGCAGGCTCTGGGCTTGAGCGGGGAGCTGGGTGGGATGCCTCCCAGCTGTTCGGTGGGCTCCCCCGACCCCTCTTCCTGCTTCCAGCCCCAGACAGGGAACCCCTCCGGCGGCGTGCTGAGCCGAACCAGCAGCGCCATGGCCTCCAACCTCACCACCTACCCCTACTCGCCCTCTTCGCCGCCCCACCTGCCGGCTATGACCCAGGCCAGCTATTCTCCGGGCACCTCGCAGATGTACGGCCCGGGCAACAGGCTCTCCCTGCCGCAGGTGCGCCCGGGCTCCTGCGCCGAACACACAGAGCAGCTCCTGGGTCTGTCCGGCTCCTCCGTGGGCTCCCTGGGCCAGTTCGGAACCAACAGCTCCTACATGAGGCAGGCGAACTTTCCCTCTGGGCTGGAGAGGTACATGTGA

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0007389 pattern specification process biological_process
GO:0030878 thyroid gland development biological_process
GO:0060022 hard palate development biological_process
GO:0060023 soft palate development biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0006590 thyroid hormone generation biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005379 True 840 mRNA 0.68 2 22244304 22245551

Neighbor

gene id symbol gene type direction distance location
AMCG00005377 NA coding upstream 14325 22224572 ~ 22229979 (+)
AMCG00005376 slc35a3,LOC108230529,LOC105011626,LOC106613831,LOC107393273 coding upstream 33159 22200185 ~ 22211145 (+)
AMCG00005378 NA coding upstream 45563 22181664 ~ 22198741 (+)
AMCG00005381 NA coding upstream 65928 22175486 ~ 22178376 (+)
AMCG00005370 NA coding upstream 111822 22130285 ~ 22132482 (+)
AMCG00005380 NA coding downstream 14554 22260105 ~ 22261178 (+)
AMCG00005371 NA coding downstream 177438 22422989 ~ 22429677 (+)
AMCG00005372 NA coding downstream 184562 22430113 ~ 22435540 (+)
G147066 NA non-coding upstream 156960 22081644 ~ 22087344 (+)
G147027 NA non-coding upstream 287259 21956601 ~ 21957045 (+)
G147024 NA non-coding upstream 293717 21950328 ~ 21950587 (+)
G147022 NA non-coding upstream 295686 21948086 ~ 21948618 (+)
G146928 NA non-coding upstream 498853 21744879 ~ 21745451 (+)
AMCG00005365 sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 other upstream 98694 22132565 ~ 22145610 (+)
G147029 NA other upstream 260160 21957440 ~ 21984144 (+)
AMCG00005351 NA other upstream 274612 21966858 ~ 21969692 (+)
G147025 NA other upstream 291422 21952569 ~ 21952882 (+)
G147021 NA other upstream 296313 21945558 ~ 21947991 (+)

Expression


Co-expression Network