AMCG00005382 (fam78b,LOC106584378,LOC106613832,LOC105894228,LOC107717547,LOC103376640)


Basic Information

Item Value
gene id AMCG00005382
gene name fam78b,LOC106584378,LOC106613832,LOC105894228,LOC107717547,LOC103376640
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22215959 ~ 22223377 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005382
ATGGGTTGCATCCAGAGCATCACCTGCAAGTCGCGCATCAAGAGGGAGAACATCGTGGTGTACGACGTGTCGGCCACCATCGACCCGAGCCCCACTGTCATCGAGGAGAGCTCGCCCATCGTGCTGCGCTACAAGACCCCCTACTTCAAGGCTTCGGCGCGGGTGGTGATGCCCCCGGTACCCCGCAACGAGACGTGGGTCGTGGGCTGGATCCAAGCCTGCACCCAGATGGAGTTCTACAACACCTACAGCGACATCGGCATGTCGAGCTGGGAGCTGCCGGACCTGCGGGAGGGCCGGGTGAAGGCCATCAGTGACTCCGACGGCGTGAGCTACCCCTGGTACGGTAACACCACGGAGACGGTGACACTGGCCGGCCCCACCAGCAAGGTGTCGCGCTTCAGCGTCAGCATGAACGACAACTTCTACCCCAGCGTGACATGGGCGGTGCCGGTCAGCGACAGCACTCTGCCGCTGCTCACGCGCATCAAACGGGACCAGAGCTTCAGCACCTGGCTGGTGGCGCTCAACACGGCCACCAAGGAGAAGATCCTGCTGCAGACCATCAAGTGGCGCATGCGGGTGGATGTGGAGGTGGACCCCGGGCAGCCGCTGGGGCGCCGGGCCAGGCTGGTGGGCCGGGCGCAGCAGGACCAGCCGCGCATCCTAACGCGCATGGAGCCCATCCCGGCCAACGCGCTGGTCAAGCCCAACGCCAACGACGCGCAGGTGCTCATGTGGAGGCCCAAGCGGGGCCAGCCGGTGGTGGTCATCCCTCCCaagtag

Function

symbol description
fam78b Orthologous to human FAM78B (family with sequence similarity 78 member B).

NR:

description
PREDICTED: protein FAM78B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005382 True 786 mRNA 0.66 2 22215959 22223377

Neighbor

gene id symbol gene type direction distance location
AMCG00005368 imp3,LOC107709332 coding downstream 57554 22147047 ~ 22158405 (-)
AMCG00005369 NA coding downstream 69880 22145786 ~ 22146079 (-)
AMCG00005367 edem3 coding downstream 103705 22104142 ~ 22112254 (-)
AMCG00005359 NA coding downstream 128206 22086294 ~ 22087753 (-)
AMCG00005360 NA coding downstream 137132 22061733 ~ 22078827 (-)
AMCG00005374 LOC103372724 coding upstream 140217 22363594 ~ 22368062 (-)
AMCG00005375 trabd2a coding upstream 170937 22394314 ~ 22395422 (-)
AMCG00005373 NA coding upstream 193543 22416920 ~ 22422016 (-)
G147122 NA non-coding downstream 35027 22132266 ~ 22180932 (-)
G146951 NA non-coding downstream 408653 21806980 ~ 21807306 (-)
G146891 NA non-coding downstream 609424 21589996 ~ 21606535 (-)
G146857 NA non-coding downstream 654498 21560049 ~ 21561461 (-)
G146813 NA non-coding downstream 834390 21381306 ~ 21381569 (-)
G147156 NA non-coding upstream 5822 22229199 ~ 22229991 (-)
G147184 NA non-coding upstream 199612 22422989 ~ 22423230 (-)
G147185 NA non-coding upstream 202348 22425725 ~ 22426106 (-)
G147143 NA other downstream 17191 22195366 ~ 22198768 (-)
G147124 imp3,LOC107671714 other downstream 57544 22145701 ~ 22158415 (-)
G147121 NA other downstream 85410 22127907 ~ 22130549 (-)
G147109 NA other downstream 114097 22036595 ~ 22101862 (-)
G147108 NA other downstream 131015 22083717 ~ 22084944 (-)

Expression


Co-expression Network