G142828


Basic Information

Item Value
gene id G142828
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 307116 ~ 351627 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179656
gtaaatatttttacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctgtaattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacacatttcaaaaaagttataaattgattggcatgttaatgagggaaataagtatttgacccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggagagtggcaaaacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattatcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacagtacatggccccgtccatcgtccctttgatgcggtgcagttgtcctgtccccttagtccttcctcttctgaccctctcatcccctcacgcgtctcttcctgcttgtctgcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179656 True 781 lncRNA 0.45 2 307116 351627

Neighbor

gene id symbol gene type direction distance location
AMCG00004751 NA coding downstream 1282 266974 ~ 305834 (-)
AMCG00004750 LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107665078,LOC107758007 coding downstream 85939 215361 ~ 221177 (-)
AMCG00004756 NA coding upstream 25491 377118 ~ 402042 (-)
AMCG00004755 NA coding upstream 63735 415362 ~ 422526 (-)
AMCG00004754 NA coding upstream 73645 425272 ~ 434187 (-)
AMCG00004753 NA coding upstream 86347 437974 ~ 445479 (-)
AMCG00004761 NA coding upstream 208498 560125 ~ 584445 (-)
G142766 NA non-coding downstream 196624 109264 ~ 110492 (-)
G142765 osbpl9 non-coding downstream 197905 105040 ~ 109211 (-)
G142890 NA non-coding upstream 352663 704290 ~ 705016 (-)
G142891 NA non-coding upstream 380857 732484 ~ 732959 (-)
G142902 NA non-coding upstream 428791 780418 ~ 782340 (-)
G142920 NA non-coding upstream 437475 789102 ~ 792949 (-)
G142953 NA non-coding upstream 818386 1170013 ~ 1170516 (-)
G142773 NA other downstream 176413 127778 ~ 130703 (-)
G142770 NA other downstream 184589 119695 ~ 122527 (-)
AMCG00004763 LOC107393006 other upstream 292377 644004 ~ 646611 (-)
G143145 NA other upstream 2357927 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 2768602 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 3757455 4109082 ~ 4116414 (-)
G143659 NA other upstream 5385182 5736809 ~ 5783184 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G378129 NA non-coding NC_047620.1 CM018566.1 18327771 ~ 18328173 (+)