G142920


Basic Information

Item Value
gene id G142920
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 789102 ~ 792949 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179784
GCGGAGGCAGTGGGGGAATGGGATATCGCGCAGTACCTCAGAAAATCACTACATTGATCACATTGTTTACAGTCTTCAAACATCCGTGGGAACACTTGTTGCTGATCTGGCCCCAAGTGGCTACAGGAGCGCTTGTGTTGTTTCTGAAGTGACTGGATGCGCCTGCAATCGCCAAAGCCAAGACTGATCGCTTTCTGCCATTGTGGGGGGGTTTGGGGATTGGGGCTTGTGCGAGAGATTGCCGGCCATCTTGTCAGTTTGGACACAACCAAGTAGAGTTTGGAGACCATGGTGCAGGGCACAGTGTGTGTCATTGTAACATGGATCATATTATTCAGGCCTCTTTACTCATTTAACTGGTAGAAGCTGCAGTACTGAAGTGCTTCCCCTAACAAACTCTAACAAATTAAGCAGGTTTGCTGGTGCATTATAGCGAAACTACCCAGTTGTCGTCGTTCGAACACTTTCCATttcctgacattttttttaatgtttagaaTTCACATAATGAAATCGCAACACGGGGAATCTTAAACAAGCCTGTTTAATATCTCTCCCTCCATAAAATCACTGCTTGCAACGTTTTATTTGCACTTGAGAAACTAACGACTGCAACGGCTGAATGTCAGCGTGGCACAGCATTGCTTGAGCAGACCTGTGCAGCACTAGGGGTCACACTGAAGACCATGTTGATTGCCCAGCAATGCGTAACATTCACATCAGGGGCCTAGGCTGCCATGCACACTTACCCAGAGCAGTTCTGTGCACGTCTGAAAAGTAATTGTTGAAACGTTAGAGAAGGTTTGTTGAGTTTATCATTATGGTGGCAGGATCAGCTTTGTGATGATCGAAGGTACAGTACTCTCAACATCAGATGccatttcccttttttgtaGAACTTTGCATCTTAAAGAACTCCAACGTAGCAGATCTGACTTCTATCATGAGGTCCCttacaaatatttaacttccagttgtatttttattgtgaattgaAGCACAGACATTCAGAATAAAGGTGAAGACGAGGGAGTATTcatctattttaaaagcaaaccgTTTCTTCACTGAAAAAAGAAGGTTGAGACAAaagtgtgctgttttttttttatttgtttggtgaACCATCTCCATTAATCTTGAATAATTCCGTTTGGTTTCTTAATTAAGACACATCCCCATCAAAAACATAATCctctttattgattttaaacGTCTGCACTGCCTTTCAATTTCTGACACCATGGAGAACTGAAATGTAATCCGTTCAGTCATtacctatttaaaaaacaaaacttgaataCAAACTGTATAAATCAGTGAAAAAAGTAATCAACAGCCTCTAAATGCATCTTCTCCAGAACATGCCATCagcttcagatgttttttttttttcaatcaaaatGCAGAACCATCTTCATACACACCAGTGCAGTGAATGCGTAATAAATCCCGCCAACAACAAATGAAAGCATGACTTGCAAGATTGCTATTTTGTGTTCATGAGTTCATATTGAATTCCTCCAGATTACTGTTCAATTCCATTCATATAATTCGGAAAAGGGTCCCAATCTCCCAGTTTTATCCAGCTGTTTAAACAATGTGACAACCACAACCAGGTATGCAGTGCTCTTGTCTCTGCTGTTTTGCGTTGATTTACTTTCTAGACGAGCGCAGTTAACGCACACTCGCACAACAATTTATTGCAGGAAATATTTTTTGGTGCCACATTTTGACGATAGATCCCTCTAATCCtcactgttaattaatttatatttttattccctTGTCCAACATGTAGAATCTAGAAGGACTATGCCTTAAAGAAAGTCCTCAATTTCTGCTTCAGTGTGCATGCTGAAATTGAAATGGTAAAAACCCATTCTGAACCAAGCCCTGACCACACCGTGAAGGCCCTTGAACCCAACGGTTTGAACACTTTGTATCAGTTGACCTGTTGCCTTAAAATATGTCAAACTAGAATGGAAAATAGGTACAAATCTGAGATCTGTTCATCTTATcaattgtcaaatttaaattggtcatcttttttttccattaaaactacatttaaagaGAATCTGCTCAACTCACATCCTGCGATATGGCTTTCAAAAATACCACTGGGGGCTTGAACGCCTCTCCCTCGTACTGTGATCTCTTCATGAGTCCAAAGCCCCTCTCACACTAGCTACCTCTTCCCAGGTCGACCCTACCCAGGTTCTAGTACGGAGGGGAGGGGGTCAGTCCAGCGCTCTCACACTACAGTTTCAGCAAAGTGGATTAGATCTATGGTCACTGGCGGAAAAGTATGCCATATCTTGCTCTACGTGGGTCATTGCTAGCTGGCCCACCTCCCGAGGTGGGTTACGCCTGATCTGCCCGCGTGAACCTGCGTTCTACCAGTGTACGTCACACTAACCAAAATCAGAACCCGGCTGGCTACAAGGTGGGTTGTTACCCAGTTCAGTGTGCTAGTGTGAAAGGGGGCCCCCGAGTCATTTTGTCAGCCTGTGTGTTGGAGACCCATTTTGGTTGCTATATCTGGTGACAATCTGCAATATCCCACCTAACCATGATGCGTTTCATTGCAAGATCTGTAGAGAACGAAGGCCATTTAACTACTGGAGGCAAGCTAGCCGATTCATGGTGCCTTTTGTAAAACCCATTTCATGGATTGTGCACTACTGTGTCCAAGATAGTTATAATCATGTTCTGTATATActttttcgttttttgtttttttttctctagaGTTTTCATTATGAAACGTTGTCAGGTGACATGGCTACACCAAATTTAGCCCTGTTAAAAACTCTGGTAGTTGGTGTTGGAGAACTATGAGAGATTATCACTCACCTTCTGTGATGCGGATGACATTTCATAGCCCAACTGATGTGGACATCCATCAGAAAAGCACTGCCTAAATATCACTGAtgaactttaaatgttttactagCCAGTTCAGTGTAGCACAAGCAGACCCACTTCTCAAAAAAATGCGTTTGCTCTCGGTGAGAATGTGGGGCTCTGGATTGTGTCCCTTCTCCCTACCCAGCCCCTGTACTAAACTGCCCCTTGACATGTTTGTACAGAAGCAAAACTACACGAAACACTGTAGAGCAGAACTGACACAAACATCCTGTGGGCCATTTTTGGTTGGACGGTTGGTTTTCGTTCCACTTGTTCGTATCGCGAGTATGATGAAGGAATTGCACACCAGATGTTGGTCTCCTGCTGTTTCACACATCATAGCTGTGGGACAGTTTGACCCGgtcttgtttttctaatttcaaGTAGAGTCCAATGGAATCTAAAGTGGAGGCGAGTTGTTCTGTTAAATACTATAAGCAGCAACAGTTACAAGAGCAACATCTTAATTACTGTTTATTGCAGAGATCATTCAAAACTACAGTTCTTTCATCTCAAATAAATTGGACGTCGTTTCCTTGTTTTTAAGTCCAATAGTTTGGGTTACCAGGGTGTATGAAACGTACCACCTAATCATTTGTATTGTCGATGATCCTGTCAGTTTATTCACCAAATCAAATGCTTTTACAAGGCAATCAGGATGGTAGTGGTGTTTGTGCATCAAACatgtccatgtttttttttattttttatatacaagatCAGCGacttactgtttatttattatttcctttctgTAACAACTGCATCACGTGCAactctttttcttgtttgttttaaactgtactGAAGAAACACTACGTAAGCATTTATACCAAAGGCCacttttttcttcagttctACTAGTGCAATGAAAACTAAACACCTTCTTAATTGTAAATATGTGAATTTTAACAGGGATTTAAATGAATGGCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179784 True 3848 lncRNA 0.41 1 789102 792949

Neighbor

gene id symbol gene type direction distance location
AMCG00004760 NA coding downstream 100651 677866 ~ 688451 (-)
AMCG00004762 NA coding downstream 115227 663525 ~ 673875 (-)
AMCG00004761 NA coding downstream 204657 560125 ~ 584445 (-)
AMCG00004753 NA coding downstream 343623 437974 ~ 445479 (-)
AMCG00004754 NA coding downstream 354915 425272 ~ 434187 (-)
AMCG00004765 NA coding upstream 80 793029 ~ 799872 (-)
AMCG00004764 NA coding upstream 40942 833891 ~ 835155 (-)
AMCG00004766 NA coding upstream 43293 836242 ~ 858506 (-)
AMCG00004767 NA coding upstream 80927 873876 ~ 945686 (-)
AMCG00004770 NA coding upstream 207587 1000536 ~ 1001328 (-)
G142902 NA non-coding downstream 6762 780418 ~ 782340 (-)
G142891 NA non-coding downstream 56143 732484 ~ 732959 (-)
G142890 NA non-coding downstream 84086 704290 ~ 705016 (-)
G142828 NA non-coding downstream 437475 307116 ~ 351627 (-)
G142766 NA non-coding downstream 678610 109264 ~ 110492 (-)
G142953 NA non-coding upstream 377064 1170013 ~ 1170516 (-)
G142959 NA non-coding upstream 496715 1289664 ~ 1289985 (-)
G142967 NA non-coding upstream 586931 1379880 ~ 1380879 (-)
G142972 NA non-coding upstream 593474 1386423 ~ 1386687 (-)
G142990 NA non-coding upstream 734629 1527578 ~ 1527810 (-)
AMCG00004763 LOC107393006 other downstream 142491 644004 ~ 646611 (-)
G142773 NA other downstream 658399 127778 ~ 130703 (-)
G142770 NA other downstream 666575 119695 ~ 122527 (-)
G143145 NA other upstream 1916605 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 2327280 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 3316133 4109082 ~ 4116414 (-)
G143659 NA other upstream 4943860 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 7561040 8353989 ~ 8377001 (-)

Expression


Co-expression Network