G142967


Basic Information

Item Value
gene id G142967
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1379880 ~ 1380879 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179843
TGAGACCTCCTGGAAATACCTGGTGCTGCAAGCTTTTTACGTCTCCTGGGTAACGTAATCGAAGCTCTTAATAGTCTCTTTCTGTCTGGAGGAGATATAATNNNNNNNTTGTACACATACCCGGCTTCTTTCAACACCCTTTGCTGCACTGGTATTTTTCccatcatttttctttttttttttttgttggaagTTCCGTCAATACCCACNNNNNNNNNNGAGACATCATGCAGCCAGGCCTCTTCGCTTGCGGCCACACCATCCTGAACGCGCCCGATCTCGTCAGATCTCGGAAGCTNNNNNNNNNNNNNNNTGGTCAGTACTTGGATAGGTGACCTCCTGGAAATACCAGGTGCTGCAAGCTTTTCACGTCTCCTGGGAAACTTCCTCGTAGCTCTTAATACTCTCTTTCAGTTTGGAGGAGATATAATTGAAGAATTTTACACGTACCCGGCTACTTTCAATACCCTTTGCTGCACTGTTATGTTTCcctccatttttctttttttgcaggAAATTCCGTCAATACCCGCCTGCCATTAAGAGACATCATGC

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU179843 True 555 lncRNA 0.43 2 1379880 1380879

Neighbor

gene id symbol gene type direction distance location
AMCG00004773 NA coding downstream 151297 1228125 ~ 1228583 (-)
AMCG00004768 cacna1e,LOC107665051,LOC107549680,LOC107599003 coding downstream 202258 1177341 ~ 1177622 (-)
AMCG00004771 LOC107700326,LOC107562853,LOC107671548,LOC106613910,LOC108436878 coding downstream 229590 1142360 ~ 1150290 (-)
AMCG00004772 NA coding downstream 271363 1074450 ~ 1108517 (-)
AMCG00004769 LOC106613910 coding downstream 308186 1014344 ~ 1071694 (-)
AMCG00004779 NA coding upstream 138638 1519517 ~ 1520486 (-)
AMCG00004778 agbl4 coding upstream 180906 1561785 ~ 1606266 (-)
AMCG00004777 bend5,LOC106584333 coding upstream 310149 1691028 ~ 1718262 (-)
AMCG00004780 LOC100286605,LOC106613892,LOC103464064 coding upstream 515401 1896280 ~ 1912141 (-)
AMCG00004781 NA coding upstream 820332 2201211 ~ 2204495 (-)
G142959 NA non-coding downstream 89895 1289664 ~ 1289985 (-)
G142953 NA non-coding downstream 209364 1170013 ~ 1170516 (-)
G142920 NA non-coding downstream 586931 789102 ~ 792949 (-)
G142902 NA non-coding downstream 597540 780418 ~ 782340 (-)
G142891 NA non-coding downstream 646921 732484 ~ 732959 (-)
G142972 NA non-coding upstream 5544 1386423 ~ 1386687 (-)
G142990 NA non-coding upstream 146699 1527578 ~ 1527810 (-)
G143046 NA non-coding upstream 514209 1895088 ~ 1924283 (-)
G143062 NA non-coding upstream 908700 2289579 ~ 2290140 (-)
G143095 elavl4,LOC107657884,LOC106613894 non-coding upstream 1175975 2556854 ~ 2561991 (-)
AMCG00004763 LOC107393006 other downstream 733269 644004 ~ 646611 (-)
G142773 NA other downstream 1249177 127778 ~ 130703 (-)
G142770 NA other downstream 1257353 119695 ~ 122527 (-)
G143145 NA other upstream 1328675 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 1739350 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 2728203 4109082 ~ 4116414 (-)
G143659 NA other upstream 4355930 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 6973110 8353989 ~ 8377001 (-)

Expression


Co-expression Network