G142990


Basic Information

Item Value
gene id G142990
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1527578 ~ 1527810 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179873
TTGTCCCTTTATCAGCCTCAGCATGCTTTGAGGTCGACTAATAGTGGCTTCCTCTGTATTCCGAGGGTGAGGCTCAGGAGGAAAGGAGAGgttgctttctgtgtttatgCTCTGCAGCTGTGGAACTTTCTCCCCGAGCATGTCAGAGGCTCACCTACAGTAGCTACTTTTAAATCTAGGCTTAagacttatttttataatttagctttttgattttatatattgttgttttt

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU179873 True 233 lncRNA 0.41 1 1527578 1527810

Neighbor

gene id symbol gene type direction distance location
AMCG00004779 NA coding downstream 7092 1519517 ~ 1520486 (-)
AMCG00004773 NA coding downstream 298995 1228125 ~ 1228583 (-)
AMCG00004768 cacna1e,LOC107665051,LOC107549680,LOC107599003 coding downstream 349956 1177341 ~ 1177622 (-)
AMCG00004771 LOC107700326,LOC107562853,LOC107671548,LOC106613910,LOC108436878 coding downstream 377288 1142360 ~ 1150290 (-)
AMCG00004772 NA coding downstream 419061 1074450 ~ 1108517 (-)
AMCG00004778 agbl4 coding upstream 33975 1561785 ~ 1606266 (-)
AMCG00004777 bend5,LOC106584333 coding upstream 163218 1691028 ~ 1718262 (-)
AMCG00004780 LOC100286605,LOC106613892,LOC103464064 coding upstream 368470 1896280 ~ 1912141 (-)
AMCG00004781 NA coding upstream 673401 2201211 ~ 2204495 (-)
AMCG00004785 dmrta2,LOC106613895,LOC106584330 coding upstream 1161436 2689246 ~ 2691272 (-)
G142972 NA non-coding downstream 140891 1386423 ~ 1386687 (-)
G142967 NA non-coding downstream 146699 1379880 ~ 1380879 (-)
G142959 NA non-coding downstream 237593 1289664 ~ 1289985 (-)
G142953 NA non-coding downstream 357062 1170013 ~ 1170516 (-)
G142920 NA non-coding downstream 734629 789102 ~ 792949 (-)
G143046 NA non-coding upstream 367278 1895088 ~ 1924283 (-)
G143062 NA non-coding upstream 761769 2289579 ~ 2290140 (-)
G143095 elavl4,LOC107657884,LOC106613894 non-coding upstream 1029044 2556854 ~ 2561991 (-)
G143105 NA non-coding upstream 1112768 2640578 ~ 2640860 (-)
G143142 NA non-coding upstream 1153510 2681320 ~ 2681561 (-)
AMCG00004763 LOC107393006 other downstream 880967 644004 ~ 646611 (-)
G142773 NA other downstream 1396875 127778 ~ 130703 (-)
G142770 NA other downstream 1405051 119695 ~ 122527 (-)
G143145 NA other upstream 1181744 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 1592419 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 2581272 4109082 ~ 4116414 (-)
G143659 NA other upstream 4208999 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 6826179 8353989 ~ 8377001 (-)

Expression


Co-expression Network