G143046


Basic Information

Item Value
gene id G143046
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1895088 ~ 1924283 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179935
TCAAAGGGAGGTTCCCTTTGTGTTTGTTAGGAGATGAGAGAGAGTTGTGTGTTTCTGACCTCTCTAAATTCTAGCCTACTTATAACCTCTATCCCTTTTGCATTATTGGTCTGCTGTCCTAAGTGAGGTGgttcttgccttttttttttttggagcctttttgttttgaggcctttttgggtttttttggtttgtgtgcctggggctttttgttatttttgtcttgGATTGCCTTTTTGGactttgcatacatttttgttcctgttaGAGTATTTGGGAAagatatttttgttctttcatgATTGGATTACAAAGTCATTCCTGGACCAGTCCTGGATCTTCGGCCTAACTCAAGGAGTGATAATGTTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179935 True 371 lncRNA 0.39 2 1895088 1924283

Neighbor

gene id symbol gene type direction distance location
AMCG00004777 bend5,LOC106584333 coding downstream 176826 1691028 ~ 1718262 (-)
AMCG00004778 agbl4 coding downstream 288822 1561785 ~ 1606266 (-)
AMCG00004779 NA coding downstream 374602 1519517 ~ 1520486 (-)
AMCG00004773 NA coding downstream 666505 1228125 ~ 1228583 (-)
AMCG00004768 cacna1e,LOC107665051,LOC107549680,LOC107599003 coding downstream 717466 1177341 ~ 1177622 (-)
AMCG00004781 NA coding upstream 276928 2201211 ~ 2204495 (-)
AMCG00004785 dmrta2,LOC106613895,LOC106584330 coding upstream 764963 2689246 ~ 2691272 (-)
AMCG00004787 faf1,LOC102783815 coding upstream 769742 2694025 ~ 2993047 (-)
AMCG00004789 rnf11,LOC106584326,LOC105019411,LOC106599774 coding upstream 1112899 3037182 ~ 3047714 (-)
AMCG00004794 LOC106584322,LOC108266023,LOC102791747 coding upstream 1481566 3405849 ~ 3416284 (-)
G142990 NA non-coding downstream 367278 1527578 ~ 1527810 (-)
G142972 NA non-coding downstream 508401 1386423 ~ 1386687 (-)
G142967 NA non-coding downstream 514209 1379880 ~ 1380879 (-)
G142959 NA non-coding downstream 605103 1289664 ~ 1289985 (-)
G142953 NA non-coding downstream 724572 1170013 ~ 1170516 (-)
G143062 NA non-coding upstream 365296 2289579 ~ 2290140 (-)
G143095 elavl4,LOC107657884,LOC106613894 non-coding upstream 632571 2556854 ~ 2561991 (-)
G143105 NA non-coding upstream 716295 2640578 ~ 2640860 (-)
G143142 NA non-coding upstream 757037 2681320 ~ 2681561 (-)
G143144 NA non-coding upstream 767073 2691356 ~ 2691959 (-)
AMCG00004763 LOC107393006 other downstream 1248477 644004 ~ 646611 (-)
G142773 NA other downstream 1764385 127778 ~ 130703 (-)
G142770 NA other downstream 1772561 119695 ~ 122527 (-)
G143145 NA other upstream 785271 2709554 ~ 2710004 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other upstream 1195946 3120229 ~ 3217229 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 2184799 4109082 ~ 4116414 (-)
G143659 NA other upstream 3812526 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 6429706 8353989 ~ 8377001 (-)

Expression


Co-expression Network