G143109 (LOC103376870)


Basic Information

Item Value
gene id G143109
gene name LOC103376870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2720298 ~ 2761630 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180005
taatcctttaggtgagtgtatatataatatatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagttgctcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttgga

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180005 True 686 lncRNA 0.44 3 2720298 2761630

Neighbor

gene id symbol gene type direction distance location
AMCG00004783 elavl4,LOC107657884,LOC106613894 coding upstream 161625 2548607 ~ 2558673 (+)
AMCG00004782 elavl4,LOC106613894 coding upstream 229608 2490454 ~ 2490690 (+)
AMCG00004775 NA coding upstream 1263048 1435263 ~ 1457250 (+)
AMCG00004776 NA coding upstream 1288488 1429518 ~ 1431810 (+)
AMCG00004774 NA coding upstream 1313051 1406999 ~ 1407247 (+)
AMCG00004784 NA coding downstream 190681 2952311 ~ 2952624 (+)
AMCG00004786 NA coding downstream 236376 2998006 ~ 3002925 (+)
AMCG00004791 calr,LOC102308154,LOC102192544,LOC101484884,LOC107393148,LOC106512241,LOC100701980 coding downstream 490340 3251970 ~ 3262480 (+)
AMCG00004792 NA coding downstream 540873 3302503 ~ 3307925 (+)
AMCG00004795 xpr1,xpr1a,LOC106584313,LOC106613915,LOC105029208 coding downstream 770854 3532484 ~ 3556450 (+)
G143107 NA non-coding upstream 38750 2681304 ~ 2681548 (+)
G143074 NA non-coding upstream 157909 2559317 ~ 2562389 (+)
G143029 NA non-coding upstream 411424 2259729 ~ 2308874 (+)
G142973 NA non-coding upstream 1308091 1411957 ~ 1412207 (+)
G142958 NA non-coding upstream 1430313 1289709 ~ 1289985 (+)
G143166 NA non-coding downstream 322742 3084372 ~ 3086394 (+)
G143170 NA non-coding downstream 337492 3099122 ~ 3099384 (+)
G143192 NA non-coding downstream 473023 3234653 ~ 3236347 (+)
G143195 NA non-coding downstream 549277 3310907 ~ 3376024 (+)
G143218 NA non-coding downstream 615439 3377069 ~ 3377271 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 161218 2440541 ~ 2559080 (+)
AMCG00004749 NA other upstream 2597333 116491 ~ 122965 (+)
AMCG00004788 NA other downstream 361451 3123081 ~ 3160209 (+)
AMCG00004793 NA other downstream 616185 3377815 ~ 3395158 (+)
G143366 NA other downstream 1187796 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 1347392 4109022 ~ 4109655 (+)
G143471 LOC107575789 other downstream 1610079 4371709 ~ 4372089 (+)

Expression


Co-expression Network