G143166


Basic Information

Item Value
gene id G143166
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3084372 ~ 3086394 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180072
tgaagactctgtataggatgttgaagaaagtgttttgtgataattatataatgttttatattaatactagcattagaagtagtttgtatacagactgagcagattagatttagcaggacaagtaaagggtcaacaaggttggtttgttagaatctcctgtcagtaatgaaagattacacagtgctgaaatagcctatagatgtctgctgtgaatttgtttatgacttaatcgtttctcaagataggcaggaatgtttctgttactgagcgattgacactaggtaaatgaccaccgtgggatcgcatcttcctagtgcacatcaaagacggacatctgctttttgtatccatcacctcttcacgggaggacagatcgtaaacggactcGGACCTTTATCTTccgattggatgaacggccataagatgttacgtcatttttcctataaagttgtactcatgtttgtaaacattaagtctcactgaaggaattatttctgacgtggggcttccgagcggctcgattaaagttctatttgctttgtctccgcgacttctccacttatttctgagacggttctacaacCTGGCGTCACGATCGAGGATCTGAATTTGCCTCCACTCCCGGGACCAAAATATGGGTGAGTAGCTTTAAAATgaccaccctgtatatttagatttgatctcgGGATTGTGTGAGTCTctcagattgtaatttaaagagaacctgtggagaggcagaggtaaaacaaatagaaaggttgACTGTACAGCGGAGGTTCACAGTAGGGTGAACTCCAGGTAagacagatctgcggggagAGATGCCAAGGGAACCGAAAGGTACGACGAGGCCTGCTGAGCTCCAAGTTAAGCAAGAAAATCCTTGTACGCTGAGACAGTCAGTGGCAGTCAAAGCCAGACGGAACCTGAGGTACATAAAGTCCAGCGATATAGCCCCATCGTTGGCAAAGATAGGATTGGCATAATGGCGTTAAAAtacgtgtctgtatgtgaattcctacaggtttaaaatgttaaatttaaaatgataagagaagtttaaaaatgttaaacttaaaatggtaaagacaagataaaaaaactgacaaagtttctataattctttgtctgaataataagaatttagagaagaaattgatcatAATAGATCAAGAAAACCCCAAAGTAGTGTAATtcaaagattattttacatctgatttttaataataacaatataataaataaataaatgctaagggctgtttgagacaAAACACGCCACTAATCtaatatctgaattatctttggatttcaatctgtatgtgctttgtgtgtttatttacatatatctaAACATAATAGTCTGAAGGTTATGTaaggtaaatgtctgttttgtatgctttgtatttttaatattgtgcatagtccagaataaaactgagaagggaagtaaccaataatttcagaattatatttacaattacgcagttattgatgttttaacaacagattaatgaggatttagacatttaactgtatacagagtgcataagcatcagaaataagaaatgaataatgaattctattataagaataatgttaaagtaataaaaaatatacattaaatacatagtattattaatctaataaagtaaataaatagtaatggtGTCCTCTAAGACTCAGAAGAACaagaatttgtttgttaaaaatcatattatggacaaattctgtaaagtcaaattaaaggaaaactaaaggCTGGAATCCACAGGAGCAGCACTCTGGTGCAGCCCTGAGTgacagcctgatgtaaaatccatAGCAGGGGAATGTAAACAGTATAGTGACATATTATAatcttattttagaaaatatttggttATTAGTGCATtgcataaaatacctgaaataaaagttaaaattagacctTGGATTTAAGATGAGTGAATTAGTCAAAGGGTAAGAATTTTAAGGatactatagaaatataaattatgagcattgaataagtgagctaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180072 True 2023 lncRNA 0.35 1 3084372 3086394

Neighbor

gene id symbol gene type direction distance location
AMCG00004786 NA coding upstream 81447 2998006 ~ 3002925 (+)
AMCG00004784 NA coding upstream 131748 2952311 ~ 2952624 (+)
AMCG00004783 elavl4,LOC107657884,LOC106613894 coding upstream 525699 2548607 ~ 2558673 (+)
AMCG00004782 elavl4,LOC106613894 coding upstream 593682 2490454 ~ 2490690 (+)
AMCG00004775 NA coding upstream 1627122 1435263 ~ 1457250 (+)
AMCG00004791 calr,LOC102308154,LOC102192544,LOC101484884,LOC107393148,LOC106512241,LOC100701980 coding downstream 165576 3251970 ~ 3262480 (+)
AMCG00004792 NA coding downstream 216109 3302503 ~ 3307925 (+)
AMCG00004795 xpr1,xpr1a,LOC106584313,LOC106613915,LOC105029208 coding downstream 446090 3532484 ~ 3556450 (+)
AMCG00004798 mfsd14a,LOC106613595 coding downstream 507006 3593400 ~ 3627243 (+)
AMCG00004796 NA coding downstream 546499 3632893 ~ 3642414 (+)
G143109 LOC103376870 non-coding upstream 322742 2720298 ~ 2761630 (+)
G143107 NA non-coding upstream 402824 2681304 ~ 2681548 (+)
G143074 NA non-coding upstream 521983 2559317 ~ 2562389 (+)
G143029 NA non-coding upstream 775498 2259729 ~ 2308874 (+)
G142973 NA non-coding upstream 1672165 1411957 ~ 1412207 (+)
G143170 NA non-coding downstream 12728 3099122 ~ 3099384 (+)
G143192 NA non-coding downstream 148259 3234653 ~ 3236347 (+)
G143195 NA non-coding downstream 224513 3310907 ~ 3376024 (+)
G143218 NA non-coding downstream 290675 3377069 ~ 3377271 (+)
G143237 NA non-coding downstream 494688 3581082 ~ 3588105 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 525292 2440541 ~ 2559080 (+)
AMCG00004749 NA other upstream 2961407 116491 ~ 122965 (+)
AMCG00004788 NA other downstream 36687 3123081 ~ 3160209 (+)
AMCG00004793 NA other downstream 291421 3377815 ~ 3395158 (+)
G143366 NA other downstream 863032 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 1022628 4109022 ~ 4109655 (+)
G143471 LOC107575789 other downstream 1285315 4371709 ~ 4372089 (+)

Expression


Co-expression Network