G143311


Basic Information

Item Value
gene id G143311
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3747928 ~ 3770343 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180247
acacacagttaatgtcatttttatttgttttgcaacttTTGTTTACAcactaatatattatatatatataatatataatataaaatatatatacacacacacacacacacacacatatatagacacatatatatatatatataaaaagattgTAAAATACTGTTCTACAGTAATGAAATAATATTCTCTATACACACCTCAGCAAAAATATAAGTACTTTTTTAGCTATTCTCTGTATGTTTCAAGAGGTAGAATTATCTGATCGTTAAGATTCTCCCACAGTTTATATACACAGAAAACCATTCCATTGTTCGGAATGTACAGTATACTAcagataaaatacatattaatatcaTGATTCATCTCAGCAGGTAGACAAAGTctgattgttttttaagaaagaaaacgCATGATCAACAAAGAGTAAAACATGGCTACAGCTTGTTCCTTGTAAAATAGCCCAAAATAAATTCTAACGAATTGGGGAAGATGAGAGCAGTTGTTCTTTCTTCCATTACTTGTTACCAGAAAGAAAGCAATTTCCCCAttctcttttcattattttctactTAGTGCCTCCCTCTATTTTTCAAAACTGTCAgttctattaaaatgtattatgttattgCATGTTTGCTAAAAATATACcaacaattaagcaaataaacgTAAAATATGACGTTGTTAGGATGAGGCGAGAATGTTCCTGTGAATGGAAGAAGATTCCTAAACTCAATTAAAACTACATCTGCTGTAGTGTACATCTCAAAAGCAGTTCAAAGGGAAGTTATGCCTTTAAATCATGCTTTTTCAGTAACGACCGGAGTAATACACTGCCTTTTCAGATGCGTTTGTTTGTGCCTGCCGAGACTAAGTAATGGTCAGTTAAGCCAAAATTCCCCTCAGTCTGTGTGCAGTTGTCAAAGCATTTCTGTGAAGATGACGCATCTTCTATTCTAGGAATTAACAGAAAATAGAGTTATAGATGTGTCAGAACAAGTAACTTGTAACTAATAACAAGTATCAGGTACAAGTAACTGTGCACATCAAGCTTAATAATGTCTAGGTGTAGATGCATCATGACTGCTAAagaaatctattaaaatattaaaataaagtcaaatcCGAGTGCAACTGATCAGCGACATTCAGTGTGTTCACACAGCATTTGCAACAGTAGCAAAATGCATGTACCAAAACAATGCGACAGACTTCTCTCTGCTCCAGTCAGCATATTTTACTACAATGACTAAACTCCCCTTTCCTGGCTTTATATACAAACCTTTCAAATTTCCTACAGTTTTAAAATCAGCTGCTGGTATTCATCCAAAGCATGTTAGTTATGCCCAGCCATAGACTAGGATTCCCTCAAGAAAAAGCTCATTAACAACAAGATGTGATTAAAACGATAGAAACATAGAAtcttttcagtgtgtgtttgaaaatacttcaccatacatatataaaataaaataaaaggttcttgtaaaaaaaaaagtatttttttttttttgctcactGGATTCCTTTTACTCTAAGAAAAGCAGTAAAaatgggggggggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180247 True 1566 lncRNA 0.33 2 3747928 3770343

Neighbor

gene id symbol gene type direction distance location
AMCG00004801 NA coding downstream 73104 3660865 ~ 3674824 (-)
AMCG00004802 NA coding downstream 93923 3648760 ~ 3654005 (-)
AMCG00004800 NA coding downstream 99728 3641490 ~ 3648200 (-)
AMCG00004799 NA coding downstream 115025 3612911 ~ 3632903 (-)
AMCG00004794 LOC106584322,LOC108266023,LOC102791747 coding downstream 331644 3405849 ~ 3416284 (-)
AMCG00004808 NA coding upstream 86153 3856496 ~ 3864079 (-)
AMCG00004811 NA coding upstream 137804 3908147 ~ 3914961 (-)
AMCG00004812 dph5,LOC106613590 coding upstream 161783 3932126 ~ 3935005 (-)
AMCG00004820 NA coding upstream 363366 4133709 ~ 4150001 (-)
AMCG00004823 NA coding upstream 430665 4201008 ~ 4217993 (-)
G143258 NA non-coding downstream 156623 3589995 ~ 3591305 (-)
G143256 NA non-coding downstream 165745 3581150 ~ 3582183 (-)
G143204 NA non-coding downstream 372205 3373033 ~ 3375723 (-)
G143206 calr,LOC102308154,LOC107393148,LOC100701980,LOC101484884,LOC102192544 non-coding downstream 490002 3255811 ~ 3257926 (-)
G143189 NA non-coding downstream 523438 3224227 ~ 3224490 (-)
G143318 NA non-coding upstream 1227 3771570 ~ 3771882 (-)
G143355 slc30a7,LOC107653547,LOC107592711,LOC107588064 non-coding upstream 127873 3898216 ~ 3902159 (-)
G143370 NA non-coding upstream 179072 3949415 ~ 3949837 (-)
G143372 NA non-coding upstream 201973 3972316 ~ 3972545 (-)
G143396 NA non-coding upstream 315103 4085446 ~ 4088993 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 530699 3120229 ~ 3217229 (-)
G143145 NA other downstream 1037924 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 3101317 644004 ~ 646611 (-)
G142773 NA other downstream 3617225 127778 ~ 130703 (-)
G142770 NA other downstream 3625401 119695 ~ 122527 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 338739 4109082 ~ 4116414 (-)
G143659 NA other upstream 1966466 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 4583646 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 5066017 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 5102542 8872885 ~ 8906594 (-)

Expression


Co-expression Network