G143355 (slc30a7,LOC107653547,LOC107592711,LOC107588064)


Basic Information

Item Value
gene id G143355
gene name slc30a7,LOC107653547,LOC107592711,LOC107588064
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3898216 ~ 3902159 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180296
agggaacttcAAGGATTTGGAAGCCgtttattacattacaaaaaaaacaaaaactgtcctgttgcacatttaaaaaactgaagagACCGAGGgaggaattaaaaataatgtgtgcaCTTCTTTTACTGTACATctgtctccccccaccccatcatTTCCTGTTggtcagcacacacacacacagatggcagaagtgtgtgagtgggtgtaTGTGTTTTCCACAGACATGTTTGCATTTAAGAACGGTCAAGTGGCATTCTTGGGAATATGCCAGAACACTTAAAAGCCTTCGTTGGGGACGTATGTGGAGCTGTACGCCAGCTCTGGAAGGGCAGGGCCCAGACCCTAGCTGTCTGTCAGCAGTCAGGAATACTGGTTGGGTGCAGCTCCTGCATAGGCCTAGTTTGTCCACACACCGCCCCCGATTGTCCATATccataatgattttaaaaaatgaggaacaaagaaaaaaataaagaaaaaggcaCTTTGGCAACCAAGAATACAGTTTGGCTCAGAACGTCTGCAAAgtacaaaataaccaaaaaaatgtGTGATGACATTAGTTGTCAAGAAGAcatctgctttaaaaaataaaaatcttaacTGAATCCATGACATAGTTACAAATCAATTTTGACTGCTTGCTTGAGCATAGTGATCATCTGATAAAGAAATAATAGATTCCATattagagggaaaaaaaaaaaaaataagtgtgtgCAGAAATGGGAAATCACATTATTGGCAAgttttttgtctgttgttttccCCCCCCAAGAGTGTCCAGTGAAGGTGCCCCCCATCTTGGTCCCTTTTTGTTGGATGGAGGCACCTGGACCCAGAGTGAGGAGAAGTCCATTTCACTGATCCTTACAGTACCGAGAAGGCTTTGGTCCCAGGACTCCTACAGAGAGGTCCACTACATAGCGGCGACATCAATCTGGACATACAGTTGCCTTATTCCTGCCTGTAAACAACCAAcctgtgtgaaaatgttgtgaGTCTGGCTTAAAATCCATCGGGCATCAGCATCAGGGGCAACAAGCAGCTTTAGAGTGCCAATGTAAATGTCTGTGCACAGGGTCCAGAAGTGTGGTTCCTGTAAGTTGTAGACTCCCTGAAGGTGTTGGACCTGCAAGGAGAGAGCAGTACATACCGTCTATCAACAGGGCAATGGACAACAATGCTCCCTGATCAGTAATGCCAACTGTGCCCGCCCCCAGCACGTGCAGCTGGATTCTGGGGAAACCAGTTCCACTTGCCTTGGCACTCGAAGGTGCCACTGTATCCTTTGCGATGTGTCCACCGAACATCTCAGCTAGATAGGAAGGCACAGTTGCAATGAGCAATAGTACTTAAATGACTATTGAGGTGTTATG

Function

symbol description
slc30a7 Predicted to enable zinc ion transmembrane transporter activity. Predicted to act upstream of or within zinc ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including blastoderm; notochord; prechordal plate; pronephric duct; and yolk. Orthologous to human SLC30A7 (solute carrier family 30 member 7).

NR:

description
PREDICTED: zinc transporter 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180296 True 1382 lncRNA 0.44 2 3898216 3902159

Neighbor

gene id symbol gene type direction distance location
AMCG00004808 NA coding downstream 34137 3856496 ~ 3864079 (-)
AMCG00004801 NA coding downstream 223392 3660865 ~ 3674824 (-)
AMCG00004802 NA coding downstream 244211 3648760 ~ 3654005 (-)
AMCG00004800 NA coding downstream 250016 3641490 ~ 3648200 (-)
AMCG00004799 NA coding downstream 265313 3612911 ~ 3632903 (-)
AMCG00004811 NA coding upstream 5988 3908147 ~ 3914961 (-)
AMCG00004812 dph5,LOC106613590 coding upstream 29967 3932126 ~ 3935005 (-)
AMCG00004820 NA coding upstream 231550 4133709 ~ 4150001 (-)
AMCG00004823 NA coding upstream 298849 4201008 ~ 4217993 (-)
AMCG00004824 NA coding upstream 422804 4324963 ~ 4359936 (-)
G143318 NA non-coding downstream 126334 3771570 ~ 3771882 (-)
G143311 NA non-coding downstream 127873 3747928 ~ 3770343 (-)
G143258 NA non-coding downstream 306911 3589995 ~ 3591305 (-)
G143256 NA non-coding downstream 316033 3581150 ~ 3582183 (-)
G143204 NA non-coding downstream 522493 3373033 ~ 3375723 (-)
G143370 NA non-coding upstream 47256 3949415 ~ 3949837 (-)
G143372 NA non-coding upstream 70157 3972316 ~ 3972545 (-)
G143396 NA non-coding upstream 183287 4085446 ~ 4088993 (-)
G143400 serpinc1,LOC102797582 non-coding upstream 192491 4094650 ~ 4098416 (-)
G143406 NA non-coding upstream 205360 4107519 ~ 4108856 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 680987 3120229 ~ 3217229 (-)
G143145 NA other downstream 1188212 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 3251605 644004 ~ 646611 (-)
G142773 NA other downstream 3767513 127778 ~ 130703 (-)
G142770 NA other downstream 3775689 119695 ~ 122527 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 206923 4109082 ~ 4116414 (-)
G143659 NA other upstream 1834650 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 4451830 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4934201 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4970726 8872885 ~ 8906594 (-)

Expression


Co-expression Network