G143396


Basic Information

Item Value
gene id G143396
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4085446 ~ 4088993 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180342
TCAGATTTACAATTTTTAATCACAGTCCCTGCCAGTAAAGAATCACTGTTGCACATAAGTTACATTGTCTTTAAAATTTCAcaggttatttttttcttttttttgtcttcaaacTTCCAGTTTGTTAACCCCTCCCAactcaaaggaaaaaaaaagcagattgtattatacaaaaatgcaaaccaATTTTCACACAGTGAattcttttacaaaaaaaaaaaaaaaaaaagtataacagCTACATCCATATTGGAGAAAGATAATTCTAAACATTCCTTAATGgagtataatataaaaacaaacattttttttttattttttatttttttgagttaAACTTGTACCTTAATTTAAGCAAATCTATTACAAGACAATTTGGGAGTAATCATCAAAAGCAATTACATTCCCAATGTTaggaataaaattaatataatgcagCAAGAACAGCCCAATCTTGTTACAATGAATGCAGTTTGTGtggaggcaaaaaaaaaacgttcCTAAAGGAGCATACAGAGAGGGCTAAGGTGAACACTCCCCCGAGAGCCATGAGTGCTCAAAGGAAAATCGACTCAATAGGAACCGGTTTCTGTGTCAAACTACAAGCAATTAACCAGTGCGCGTCACTGAAGCCTGTCATATGGAATTTTGCCCAATGCGATCCACTTCCCCATGCATGTAACTGGACAAAGAGCACTGTACAACTGATACAGTGACCAACACAGATCTTAcaaagatcaaaacaaaaaccaaactaATCCACCAAAATTcaaggagtgagagagaggcacaCTGACGGCCAACTGGTCAGTGAAAATACTGCCTTAAACTGTAGCTTGCTATCATTActtcccccacccacccccctacatacacaattaaaaatctACCAATCAAGTGAATCTGCTTCCATAATTCTTGGTACACAGGAGAACTGCAGTGTGGCATGTGCTAGTCTTTAGATCATATTTATCAAGGCAGGGGTTTGgggaatacatttggaaattggttgttttgtattcaaattagattttttttttaatttattaacaaaGTGATCAGTTTCTCCCAATGTGAGTAAAAACAGCCACTCTGTATGAAGTTTTCTCAGTCAGGGACGTAAGGTAAAGACAAatgctttatataaataaacaaaaaacaaaaaatatatatgacaatCCAATTACAAACATTTCCAGACTGCAGAAGGTAAACAGTAGGTATGTTGTTCCACTATATGTATCAGAAGATCTGTATTGTGATCAATGGAAGACCGTAAGCAAAAAATGTTGACGTGGCAGAAGAAACTTTCTTTATATGGTAATGTGGGGGTGTATCATGTGGTGGATTTGAGTATTTAAATGCAAGGATTTTCAGATTGCCCAGGTGCATCCCCCAATTCAAACAGCTGCTTAAAACGGAAAgactaaaacaaagaaaattttACCACACTCAAAATAGCCCCTTGTTTTTATTAACTAGTTAACTTGTTCTTGTTAACATTAATTGTTCAAATCTTTTTagaaaattaagttttattttatattttagttatgtGTTCACACATTTTCAGTAGGGCAGTAATTATGACAACTGATATTAATGGcaagtttataaaaaaacattttccagttgGGGGATACAGACCTGTAACtaccttttgctgccaaaaaatattaaaatacaaatgaactaGCAAGACCACGTGGACTTTGACCGATGTCTCAACGACTAGACAAATGTGCTGTACTGAAATTTTGTTTCAGCATTGTCAAAGAATGACAGTAGAAATTACATGTGCTCCATCTCCAGCAAAATGAATGGGCGCTGAACATGGAAAGTGTGAATGTCAGAAGAAAATGCTACATGTTTGGCGTCTGTTTGGGCAAATCGGTCCATCTTGGCTGCAATTGGCCTGCTTGAATTTCCACAGGGATTTGTAGTTTATTGACCTGAATTATTTGTCTGATGTactattctattctatttttaataccATTTACCCAGTGCAggagattgttgttgttgttttaaagttaaaggccaaattagaataaaacaaaggaTAAAGAGTGGGTCTTGCATGTTTTTACCCACAATCCCCTCCACTGACTGAACTACAAgcatgttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatgacttccTCAACCGTGGCATGGTTTATCAGCTATAAATAAGCCAAGGCGAGGGCCTGTCAATACCTGAATACACAAAACATTCAATACAGTACAACCTTACATTAAGCTAGAgatttcttcttattttttggaaattgtttgtttttctttgtacagACACAAAATGGCTAAGTAAACAAATGTTACAAGTCTGGCACTGAACTCCTTTGACTAAGAAAGGATAAGAGTTGTTCAGTTCTGCATTGGCAACCAGTTACAGATCATTGCATTACTGATTTGTAGAgatcatttaatataaatgctgACTCCAAGCGAGTATATTAACAgttgcacattatatatattttatttacagatgttATGTACCCAAAccttaaatatattcaaaaacctGCCAAAAGGCACATTAATTGGGGGGTGACCATCTAGTACTTGAAGCCTACTGGACAGGGTGGTATTTTGGCTAACAGGTGCCATTAACCCTGTTTGGTCAAGCAGTTCTGATTACTTTAACCACCTCAATTGACATGCACTCCTGAAATTATGAAACGCCTTCAATAAAGCACTGCCAAAGCTCCTTGAGGCTTTGCTGAGCTGACACTTACAAATCTAAGCCAAAATCTACAGGATTCCTTATTACGGTGCAGAAAGACATTTCCCACACAATCCGAAGGATATAGCATAAGATTGATAATTTAAGTTAGTTTCTAAACTTGGTGGTTCTAAGCCCAGAATTAGAATCAGGGGGAAAGGAgcgatttgtttttttttaaattgatggtAAATGCTGCTTAAAATGTGTTGGTTGGATTTGGGAGCTTGGAGATGAAGAATCCAGAGCTTGCACACGATCACCCCTTAGAATGTGGTGTAACAAGAAGAGCTAGGCCCAAAAAAGCCCCTTCACatgtcaaaaatataaatacaaatgtggctattatttttgttttttttgtttgtttttgtgtgtctctcAGCCAGGCTCTTTCATAACCAATCTTTACGATTGCTTAAGTGTCAATAGCTCTGTCccaagcaataataataatcagaacaagaatagtaataataatcataatattacaCAGATTATACGTAAAAGAAGTTCCACCAAAAAATGGTGCTTAAGATCGCACACTGTCTCGAGAGACCAGTATATATCGGTCtacaaaaaagtacaaacacaTCAGAAAGAAGCAGAACTGGAAAATGTACCAATAAcgtacatcatcatcatcatcgtcgtcGTCGTGTACAATTTATAGTCAATAGAGCAAAGCTCTGAAAGCCACAAGTCCAGAGAAGAGTGATGTAGGGAGAGTGCCCTAAGGCTAGGCTGTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180342 True 3521 lncRNA 0.36 2 4085446 4088993

Neighbor

gene id symbol gene type direction distance location
AMCG00004812 dph5,LOC106613590 coding downstream 150441 3932126 ~ 3935005 (-)
AMCG00004811 NA coding downstream 170485 3908147 ~ 3914961 (-)
AMCG00004808 NA coding downstream 221367 3856496 ~ 3864079 (-)
AMCG00004801 NA coding downstream 410622 3660865 ~ 3674824 (-)
AMCG00004802 NA coding downstream 431441 3648760 ~ 3654005 (-)
AMCG00004820 NA coding upstream 44716 4133709 ~ 4150001 (-)
AMCG00004823 NA coding upstream 112015 4201008 ~ 4217993 (-)
AMCG00004824 NA coding upstream 235970 4324963 ~ 4359936 (-)
AMCG00004829 patj,inadl coding upstream 350547 4439540 ~ 4482780 (-)
AMCG00004828 NA coding upstream 487423 4576416 ~ 4591430 (-)
G143372 NA non-coding downstream 112901 3972316 ~ 3972545 (-)
G143370 NA non-coding downstream 135609 3949415 ~ 3949837 (-)
G143355 slc30a7,LOC107653547,LOC107592711,LOC107588064 non-coding downstream 183287 3898216 ~ 3902159 (-)
G143318 NA non-coding downstream 313564 3771570 ~ 3771882 (-)
G143311 NA non-coding downstream 315103 3747928 ~ 3770343 (-)
G143400 serpinc1,LOC102797582 non-coding upstream 5657 4094650 ~ 4098416 (-)
G143406 NA non-coding upstream 18526 4107519 ~ 4108856 (-)
G143430 NA non-coding upstream 98965 4187958 ~ 4191281 (-)
G143528 NA non-coding upstream 702697 4791690 ~ 4858146 (-)
G143539 NA non-coding upstream 896395 4985388 ~ 4985694 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 868217 3120229 ~ 3217229 (-)
G143145 NA other downstream 1375442 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 3438835 644004 ~ 646611 (-)
G142773 NA other downstream 3954743 127778 ~ 130703 (-)
G142770 NA other downstream 3962919 119695 ~ 122527 (-)
AMCG00004819 zbtb37,LOC106613586 other upstream 20089 4109082 ~ 4116414 (-)
G143659 NA other upstream 1647816 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 4264996 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4747367 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4783892 8872885 ~ 8906594 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110508868 LOC106599087 misc NC_048592.1 CM023246.2 29045566 ~ 29073745 (-)