Gene
RNA
| Item | Value |
|---|---|
| gene id | G143400 |
| gene name | serpinc1,LOC102797582 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 4094650 ~ 4098416 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| serpinc1 | Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within cellular response to estrogen stimulus and regulation of blood coagulation. Predicted to be active in extracellular space. Is expressed in liver; yolk; and yolk syncytial layer. Used to study disseminated intravascular coagulation. Human ortholog(s) of this gene implicated in antithrombin III deficiency; disseminated intravascular coagulation; intermediate coronary syndrome; thrombosis; and toxic shock syndrome. Orthologous to human SERPINC1 (serpin family C member 1). |
| description |
|---|
| PREDICTED: uncharacterized protein LOC105893089 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU180346 | True | 788 | lncRNA | 0.52 | 3 | 4094650 | 4098416 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004812 | dph5,LOC106613590 | coding | downstream | 159645 | 3932126 ~ 3935005 (-) |
| AMCG00004811 | NA | coding | downstream | 179689 | 3908147 ~ 3914961 (-) |
| AMCG00004808 | NA | coding | downstream | 230571 | 3856496 ~ 3864079 (-) |
| AMCG00004801 | NA | coding | downstream | 419826 | 3660865 ~ 3674824 (-) |
| AMCG00004802 | NA | coding | downstream | 440645 | 3648760 ~ 3654005 (-) |
| AMCG00004820 | NA | coding | upstream | 35293 | 4133709 ~ 4150001 (-) |
| AMCG00004823 | NA | coding | upstream | 102592 | 4201008 ~ 4217993 (-) |
| AMCG00004824 | NA | coding | upstream | 226547 | 4324963 ~ 4359936 (-) |
| AMCG00004829 | patj,inadl | coding | upstream | 341124 | 4439540 ~ 4482780 (-) |
| AMCG00004828 | NA | coding | upstream | 478000 | 4576416 ~ 4591430 (-) |
| G143396 | NA | non-coding | downstream | 5657 | 4085446 ~ 4088993 (-) |
| G143372 | NA | non-coding | downstream | 122105 | 3972316 ~ 3972545 (-) |
| G143370 | NA | non-coding | downstream | 144813 | 3949415 ~ 3949837 (-) |
| G143355 | slc30a7,LOC107653547,LOC107592711,LOC107588064 | non-coding | downstream | 192491 | 3898216 ~ 3902159 (-) |
| G143318 | NA | non-coding | downstream | 322768 | 3771570 ~ 3771882 (-) |
| G143406 | NA | non-coding | upstream | 9103 | 4107519 ~ 4108856 (-) |
| G143430 | NA | non-coding | upstream | 89542 | 4187958 ~ 4191281 (-) |
| G143528 | NA | non-coding | upstream | 693274 | 4791690 ~ 4858146 (-) |
| G143539 | NA | non-coding | upstream | 886972 | 4985388 ~ 4985694 (-) |
| G143544 | NA | non-coding | upstream | 918431 | 5016847 ~ 5017631 (-) |
| AMCG00004790 | ttc39a,LOC107743871,LOC107548186,LOC107699571 | other | downstream | 877421 | 3120229 ~ 3217229 (-) |
| G143145 | NA | other | downstream | 1384646 | 2709554 ~ 2710004 (-) |
| AMCG00004763 | LOC107393006 | other | downstream | 3448039 | 644004 ~ 646611 (-) |
| G142773 | NA | other | downstream | 3963947 | 127778 ~ 130703 (-) |
| G142770 | NA | other | downstream | 3972123 | 119695 ~ 122527 (-) |
| AMCG00004819 | zbtb37,LOC106613586 | other | upstream | 10666 | 4109082 ~ 4116414 (-) |
| G143659 | NA | other | upstream | 1638393 | 5736809 ~ 5783184 (-) |
| G144050 | selenof,LOC106598901 | other | upstream | 4255573 | 8353989 ~ 8377001 (-) |
| AMCG00004894 | kat3,kyat3,ccbl2,LOC100332215 | other | upstream | 4737944 | 8836360 ~ 8847775 (-) |
| G144115 | LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 | other | upstream | 4774469 | 8872885 ~ 8906594 (-) |
