G143528


Basic Information

Item Value
gene id G143528
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4791690 ~ 4858146 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180501
atgcatcaatgaaaacaaatgtacaataaatcCTTTCATgcagaaaaccaacaaaaacacatactgtGTAAATTAAATAGAACAGCTACAGTTTTGTCAGTAATTGCATACACACAAATGTAACTTGTAATGAAACTAcgttattcattttaaaggtaTTAGGCACTTTACACAACCACTCAATTGCATGCGTTTTAATATGTGTGGCTATGTGTTATTTACTTtaagaaaagtaatttatatAGTACATATTAAAGTTATCAGATAAATTAGGCAATCAGTCATATGAAAGCAATAGTCCAGGATTACCAGTAGCAGCCATTTCATTGCATatgcacaacaaaacaatgccACTGAACGGATGGGCTGTTTAAGTACTTTTAGTGAAGAATATACGTATTTCCCCCTAAATGCCAGACTTTACATATAgcttaatgaaaatgtacaccTTCTGCATGTTGTGTCCTGTCGGTGTAGTGAAGCAGAATAAATGAGGGTTGTGAATCTTGAAAGGgattaacatttgaataaaatgttcagCTTTCATGTGATTGTTGGCATGCGGTCGAAACTGAGGAAATGATTGCCTCCAGTCAGATTTTTGCTCTATTAAATCAGACTAAAACCCTTGTTTGATACTCTCCTCATGATCCCTTCACAAATCACGGTGTGCTCCTGAAGAAGAAGTGAAAGCGTAATAGGTGTAAAATATGGATATGCACAtgttttccctctctgtcttgGTGCTGAAAATATAACCCAGCAAAACCTTGtcaaaataatgaacaatttgtttattattattattattattattattattattattattattattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180501 True 840 lncRNA 0.33 2 4791690 4858146

Neighbor

gene id symbol gene type direction distance location
AMCG00004831 NA coding downstream 65221 4707092 ~ 4726469 (-)
AMCG00004830 nfia coding downstream 105367 4677473 ~ 4686323 (-)
AMCG00004828 NA coding downstream 200260 4576416 ~ 4591430 (-)
AMCG00004829 patj,inadl coding downstream 308910 4439540 ~ 4482780 (-)
AMCG00004824 NA coding downstream 431754 4324963 ~ 4359936 (-)
AMCG00004836 rabgap1l,LOC106574055,LOC106613570,LOC105011404 coding upstream 211109 5069255 ~ 5094212 (-)
AMCG00004835 rabgap1l,LOC107715121,LOC106613570,LOC106574055 coding upstream 296452 5154598 ~ 5158802 (-)
AMCG00004837 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding upstream 356182 5214328 ~ 5215407 (-)
AMCG00004838 LOC106574055 coding upstream 383884 5242030 ~ 5258280 (-)
AMCG00004842 NA coding upstream 430672 5288818 ~ 5291353 (-)
G143430 NA non-coding downstream 600409 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 682834 4107519 ~ 4108856 (-)
G143400 serpinc1,LOC102797582 non-coding downstream 693274 4094650 ~ 4098416 (-)
G143396 NA non-coding downstream 702697 4085446 ~ 4088993 (-)
G143372 NA non-coding downstream 819145 3972316 ~ 3972545 (-)
G143539 NA non-coding upstream 127242 4985388 ~ 4985694 (-)
G143544 NA non-coding upstream 158701 5016847 ~ 5017631 (-)
G143619 NA non-coding upstream 469569 5327715 ~ 5402341 (-)
G143759 NA non-coding upstream 1730005 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 1776574 6634720 ~ 6634963 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 675276 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 1574461 3120229 ~ 3217229 (-)
G143145 NA other downstream 2081686 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 4145079 644004 ~ 646611 (-)
G142773 NA other downstream 4660987 127778 ~ 130703 (-)
G143659 NA other upstream 878663 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 3495843 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 3978214 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4014739 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 7277232 12135378 ~ 12156378 (-)

Expression


Co-expression Network