G143619


Basic Information

Item Value
gene id G143619
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5327715 ~ 5402341 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180607
aacacatcaactttgaggacaagatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggctgatcggtgtatgtatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaac

Function

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2-like isoform X2

GO: NA

KEGG:

id description
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin

RNA

RNA id representative length rna type GC content exon number start site end site
TU180607 True 246 lncRNA 0.39 2 5327715 5402341

Neighbor

gene id symbol gene type direction distance location
AMCG00004842 NA coding downstream 36362 5288818 ~ 5291353 (-)
AMCG00004838 LOC106574055 coding downstream 69435 5242030 ~ 5258280 (-)
AMCG00004837 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding downstream 112308 5214328 ~ 5215407 (-)
AMCG00004835 rabgap1l,LOC107715121,LOC106613570,LOC106574055 coding downstream 168913 5154598 ~ 5158802 (-)
AMCG00004836 rabgap1l,LOC106574055,LOC106613570,LOC105011404 coding downstream 233503 5069255 ~ 5094212 (-)
AMCG00004848 NA coding upstream 312609 5714950 ~ 5730640 (-)
AMCG00004853 NA coding upstream 507873 5910214 ~ 5914976 (-)
AMCG00004854 zranb2 coding upstream 514425 5916766 ~ 5939825 (-)
AMCG00004861 NA coding upstream 844648 6246989 ~ 6341878 (-)
AMCG00004858 NA coding upstream 1100147 6502488 ~ 6509316 (-)
G143544 NA non-coding downstream 310084 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 342021 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 469569 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 1136434 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 1218859 4107519 ~ 4108856 (-)
G143759 NA non-coding upstream 1185810 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 1232379 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 1232717 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 1393592 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 2203699 7606040 ~ 7666482 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 1211301 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 2110486 3120229 ~ 3217229 (-)
G143145 NA other downstream 2617711 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 4681104 644004 ~ 646611 (-)
G142773 NA other downstream 5197012 127778 ~ 130703 (-)
G143659 NA other upstream 334468 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 2951648 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 3434019 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 3470544 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 6733037 12135378 ~ 12156378 (-)

Expression


Co-expression Network