G143834


Basic Information

Item Value
gene id G143834
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7606040 ~ 7666482 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180876
gtcaGTTGCTTCTTCTCaaagaaaatctaaaattgTAAAAGCAGATGGGAAAATGTGATCTCCAGCGTTTATTAAAATCTTTATGTCCATAAATGACAACAAAGTTACTGTAGAATTTATCGCATACAGCTAGCATACAACAGCATGTCCTCAGtctaaatgaaatacaaaagattttaacattttcatacaaaggattttcttctttaaatttATTAATGTGACGTATATATCTTTTGTTACATAAAATCTGCTACAGCAAAGTATCTTATACTTCCCTTGCACATACAAGTAAATATGGGTGGACAAAAACTGCTGTCTGTGTCAGCTTTCTAATGACATTGTTGTGCAAAATATCCAACAAACTAAATACATAGAGAATTGATAGAAGAGTTTGGGTTTTTTCATGTTTCGTTTTTGCCCAGGGAGAGGAGGAAGTGTagtcagtgatgtcacattcCCTGACTTGTCCACAAGTATCACTACATACTGAAGTGAGTCTGTTGTCATGTTTAAAGGTCTTATTTTAGGTCTATGGGAAatgatttttcttctgaaagacaGCAAGAACTATGCCATATTTAACCGTTCaaaaaatttaatttattagacAGCATCTTTCTCTAATAcgtgtataaataaaaacaaatatataagaaacaaCTCAAATGTGTCGTATGAAATGAGTTTTGACAGACTGAATTAAACGTGATAGAAAGGTGCTGAGGGTTTGCACACATCAGCTGTTGAAATGTTGTTTTAGTTGGTGTGTGTGGATATAACTTAaaagcaagcaaaaacaaaaagaataatatacatttctactaGTTGCAATTCTACATTCTGTAATAAGAATGAAATAAACCAAGATAGAAATGCAGgagtaaaaatggaaaacatagAAATATGGCAGTTTTACAGATCTCTTTTGAGAACTTTGCAAAACAACTTAAGCATTAAAAACTCATAATGGAGTGAAATTTGTTAATGCACATGCCCAGTCCAGTTTTACCAACACTGTGCCACAGGCAAAACTTGGCAGTAACCCTTTTCGTACACTTTACAGCAAACAATGGACCATTCGGTTTAGCAATTCACTCCAAGTACAGGTTTTTGCAAAATATTATTCCATTTAGTTTCAACATACCTAATAGTGGAGCTATACAGTGATGCAGAAGCCTATCAATTTTATTAGAGGGCTCCTAATTATTTTGGGTACctgaattctttttttttttttcttttttttttttttta
>TU180877
gtcaGTTGCTTCTTCTCaaagaaaatctaaaattgTAAAAGCAGATGGGAAAATGTGATCTCCAGCGTTTATTAAAATCTTTATGTCCATAAATGACAACAAAGTTACTGTAGAATTTATCGCATACAGCTAGCATACAACAGCATGTCCTCAGtctaaatgaaatacaaaagattttaacattttcatacaaaggattttcttctttaaatttATTAATGTGACGTATATATCTTTTGTTACATAAAATCTGCTACAGCAAAGTATCTTATACTTCCCTTGCACATACAAGTAAATATGGGTGGACAAAAACTGCTGTCTGTGTCAGCTTTCTAATGACATTGTTGTGCAAAATATCCAACAAACTAAATACATAGAGAATTGATAGAAGAGTTTGGGTTTTTTCATGTTTCGTTTTTGCCCAGGGAGAGGAGGAAGTGTagtcagtgatgtcacattcCCTGACTTGTCCACAAGTATCACTACATACTGAAGTGAGTCTGTTGTCATGTTTAAAGGTCTTATTTTAGGTCTATGGGAAatgatttttcttctgaaagacaGCAAGAACTATGCCATATTTAACCGTTCaaaaaatttaatttattagacAGCATCTTTCTCTAATAcgtgtataaataaaaacaaatatataagaaacaaCTCAAATGTGTCGTATGAAATGAGTTTTGACAGACTGAATTAAACGTGATAGAAAGGTGCTGAGGGTTTGCACACATCAGCTGTTGAAATGTTGTTTTAGTTGGTGTGTGTGGATATAACTTAaaagcaagcaaaaacaaaaagaataatatacatttctactaGTTGCAATTCTACATTCTGTAATAAGAATGAAATAAACCAAGATAGAAATGCAGgagtaaaaatggaaaacatagAAATATGGCAGTTTTACAGATCTCTTTTGAGAACTTTGCAAAACAACTTAAGCATTAAAAACTCATAATGGAGTGAAATTTGTTAATGCACATGCCCAGTCCAGTTTTACCAACACTGTGCCACAGGCAAAACTTGGCAGTAACCCTTTTCGTACACTTTACAGCAAACAATGGACCATTCGGTTTAGCAATTCACTCCAAGTACAGGTTTTTGCAAAATATTATTCCATTTAGTTTCAACATACCTAATAGTGGAGCTATACAGTGATGCAGAAGCCTATCAATTTTATTAGAGGGCTCCTAATTATTTTGGGTACctgaattcttttttttttttttttttttttttttttttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180876 False 1257 lncRNA 0.32 2 7606040 7666482
TU180877 True 1263 lncRNA 0.32 2 7606040 7666482

Neighbor

gene id symbol gene type direction distance location
AMCG00004865 ttll7 coding downstream 23529 7573191 ~ 7582511 (-)
AMCG00004866 NA coding downstream 43755 7536730 ~ 7562285 (-)
AMCG00004857 NA coding downstream 996883 6590220 ~ 6609157 (-)
AMCG00004859 NA coding downstream 1026038 6564339 ~ 6580002 (-)
AMCG00004860 NA coding downstream 1046690 6540191 ~ 6559350 (-)
AMCG00004872 NA coding upstream 22544 7689026 ~ 7699315 (-)
AMCG00004873 NA coding upstream 67415 7733897 ~ 7741545 (-)
AMCG00004874 NA coding upstream 95345 7761827 ~ 7763619 (-)
AMCG00004886 NA coding upstream 134368 7800850 ~ 7818689 (-)
AMCG00004885 NA coding upstream 155363 7821845 ~ 7830604 (-)
G143782 NA non-coding downstream 809817 6795933 ~ 6796223 (-)
G143773 NA non-coding downstream 970630 6635058 ~ 6635410 (-)
G143771 NA non-coding downstream 971077 6634720 ~ 6634963 (-)
G143759 NA non-coding downstream 1017294 6588151 ~ 6588746 (-)
G143619 NA non-coding downstream 2203699 5327715 ~ 5402341 (-)
G143853 NA non-coding upstream 43397 7709879 ~ 7710575 (-)
G143857 NA non-coding upstream 51778 7718260 ~ 7718802 (-)
G143859 NA non-coding upstream 53692 7720174 ~ 7720886 (-)
G143860 NA non-coding upstream 55706 7722188 ~ 7726165 (-)
G143922 NA non-coding upstream 190868 7857350 ~ 7858712 (-)
G143659 NA other downstream 1822856 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 3489626 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 4388811 3120229 ~ 3217229 (-)
G143145 NA other downstream 4896036 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 6959429 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 687507 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 1169878 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 1206403 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 4468896 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4678189 12344671 ~ 12348328 (-)

Expression


Co-expression Network