G143860


Basic Information

Item Value
gene id G143860
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7722188 ~ 7726165 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180909
CGCACAGCCCGGGCGCTTTTTTGAGGCACAAAGCGGAAGCGTACGGACCCCGAAGCACAAGCGAGAGAAGGAGCTGTCGACCCACCTTTTGTCTGGAAACTGCACCCGTTCACACTGAAAGCTAACATGTCGGGATCATCCAACATCAACTCCATGAAGAAGGTGGTGCAGCAGCTGCGTTTCGAGGCCAGCATCAACCGGGTGAAGgtgtCACAAGCAGCTGCAGACCTCCAGCAGTTTTGCATCCAGAATGCACACCACGACCCTTTACTGACCGGGGTGTCCTCCAGCACCAACCCGTTCAGGACACAGAAAGTTTGCTCATTTTTGtaactgttttgtgtgttaattTAAGAGTTTTAACCGATCACTGTGAAGCAGAAACACCGAGTCAGATGGGAGTAATTTCacagatcttttttttaaatctgcttaTGGATACTTAATTGCTTTCAAAGTACCTTTTTTTATAgttgccaatttttttttcttattgtacaTGTGCCTTTTTCTTACAAATTAGACTCTGGTGTGATGTGTTCATTTCAATCTACTGAAAATTGTGTTGAATAGTCCCAATACATGCCCTTAGTGAGAGCATTGATGGAAGGATGGATGGGATGTTACCTAAAGACTGACTGAATCACTAAACtcttcaaagttttttttttttttcccaattacTGCAAGAATACAATGCTAATCTCATGCCTTGTACAACTGTCTTTTTGTACTCTTTAaaactggatttgttttttattttattttgaaaagcaggaaataaaaatgatccTTCATCTGTCTTGTTTAAAGATGTAGTATATATTGAGCACTGTAGAAATAAA

Function

NR:

description
PREDICTED: insertion element IS630 uncharacterized 39 kDa protein-like isoform X2

GO:

id name namespace
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU180909 True 845 lncRNA 0.40 3 7722188 7726165

Neighbor

gene id symbol gene type direction distance location
AMCG00004872 NA coding downstream 22873 7689026 ~ 7699315 (-)
AMCG00004875 asf1b,as1la coding downstream 105690 7614353 ~ 7616498 (-)
AMCG00004865 ttll7 coding downstream 139677 7573191 ~ 7582511 (-)
AMCG00004866 NA coding downstream 159903 7536730 ~ 7562285 (-)
AMCG00004857 NA coding downstream 1113031 6590220 ~ 6609157 (-)
AMCG00004873 NA coding upstream 7732 7733897 ~ 7741545 (-)
AMCG00004874 NA coding upstream 35662 7761827 ~ 7763619 (-)
AMCG00004886 NA coding upstream 74685 7800850 ~ 7818689 (-)
AMCG00004885 NA coding upstream 95680 7821845 ~ 7830604 (-)
AMCG00004887 LOC107564930 coding upstream 111765 7837930 ~ 7852819 (-)
G143859 NA non-coding downstream 1302 7720174 ~ 7720886 (-)
G143857 NA non-coding downstream 3386 7718260 ~ 7718802 (-)
G143853 NA non-coding downstream 11613 7709879 ~ 7710575 (-)
G143834 NA non-coding downstream 55706 7606040 ~ 7666482 (-)
G143839 NA non-coding downstream 97483 7621166 ~ 7624705 (-)
G143922 NA non-coding upstream 131185 7857350 ~ 7858712 (-)
G144072 NA non-coding upstream 801366 8527531 ~ 8528907 (-)
G144124 NA non-coding upstream 1190326 8916491 ~ 8921153 (-)
G144142 NA non-coding upstream 1414454 9140619 ~ 9141972 (-)
G144205 NA non-coding upstream 1691367 9417532 ~ 9418417 (-)
G143659 NA other downstream 1939004 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 3605774 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 4504959 3120229 ~ 3217229 (-)
G143145 NA other downstream 5012184 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 7075577 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 627824 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 1110195 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 1146720 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 4409213 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4618506 12344671 ~ 12348328 (-)

Expression


Co-expression Network