G143922


Basic Information

Item Value
gene id G143922
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7857350 ~ 7858712 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181007
NNNgttattcacttcacctgtcagtggtcataatgttatggctgatctgtgtatatcCCCAGTAAATTGTCACTAAAATCTGGCAGTGTTTaattggtttacattttttgcattcCCATTCCATGGTTCATATCACAGTGTAACTGTATATTGTTCACCATTACATCACTTTGCATTCTCTTCTGTGGttgtttaattatgatttttagtTGTGTGCCTTGTGCAATTAACAGAGAAACATTTTCTCCCTACTACAATACAAAAGGCTGTCCAGACTTAttctttaaaagtaaaatagtcCTTCTTGTCTATAAAATCACCATGGCATACAGTATTATATGTCATATTGGTGTAGTCAACATGTATTCTGTGTTAATATAATACTGCCGTCCTACCTGGCATTGCCCTTACTGCCccctggtgttttgtttttaggtcTCCACTTTTTAGGGAATCacagttctatatattttgaTAGCATCCTACAGATGTGATATGTGATAAtatttttatcattacagttGCTCGCAATTAGTCAAGTTTGTCTGGAAGCAGCTAAGATGTCTAAAGTAATTCTGTTCTGGTACATGCTCTTGTGTTTAGTAATAGTTTCTGTGTATGGGTTTTCAAGGGGTTTCTATTCATGTGACTCAGGGCGAGAGAAAATCACCTACGGAAATTGCAAAGTACACATTGGTACCctattacagtttatttaattgttggaAGCCACTTGATATTGTTTATAAAGCTTCATGTACTATCACACAAATTGTTTATCACACAATTGTTTATACCCATCCATGACTCGATTTGACTGTTTGACTGTCAGCAGTGCTGTTGTGAATATTGGTACTGTATTGTAACTGTGTAATGCCAGTATAACAAGGCCAGTTTTAGTTAGAAATAAACACTAACGTAGACAATAGCAAGTTTATATGTTGGTTATGATCATggccataaatatatatttttttttattcaagagGAAAATGGTGTTGATCACcctcaaatgtgtttttttcttttttggtgtcAATCACGATGGAAAGAGTTTTGTGTTCAGAACTGGGGTAAAAAGTTCCAGATCTATACACTGTAatgcaatgtaaacacaataaaaagaaatgGGAGGAAACGTTCTTCTTTGGGGTGTTAATGTTCTGTTTCTCATTAACCTGacttttcattttgatgtttaaaaGTATGATGAAGAGCTACCAGTTAGTTTATCCCTTGTGTTACCAGACATTGTGAAACCTGAATGTGCTTTCTGTAACAGGACTAAGAACGTTTTTACATTACTTACTTTTAGTGCAAGAATTGAACCTGTCAAAGGGACTGATACTAAGCCAATGCCTGG

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU181007 True 1363 lncRNA 0.35 1 7857350 7858712

Neighbor

gene id symbol gene type direction distance location
AMCG00004887 LOC107564930 coding downstream 4531 7837930 ~ 7852819 (-)
AMCG00004885 NA coding downstream 26746 7821845 ~ 7830604 (-)
AMCG00004886 NA coding downstream 38661 7800850 ~ 7818689 (-)
AMCG00004874 NA coding downstream 93731 7761827 ~ 7763619 (-)
AMCG00004873 NA coding downstream 115805 7733897 ~ 7741545 (-)
AMCG00004884 LOC107715712 coding upstream 4847 7863559 ~ 7871431 (-)
AMCG00004888 NA coding upstream 15781 7874493 ~ 7906563 (-)
AMCG00004883 NA coding upstream 85258 7943970 ~ 7978769 (-)
AMCG00004877 NA coding upstream 136589 7995301 ~ 7998879 (-)
AMCG00004876 NA coding upstream 141907 8000619 ~ 8007527 (-)
G143860 NA non-coding downstream 131185 7722188 ~ 7726165 (-)
G143859 NA non-coding downstream 136464 7720174 ~ 7720886 (-)
G143857 NA non-coding downstream 138548 7718260 ~ 7718802 (-)
G143853 NA non-coding downstream 146775 7709879 ~ 7710575 (-)
G143834 NA non-coding downstream 190868 7606040 ~ 7666482 (-)
G144072 NA non-coding upstream 668819 8527531 ~ 8528907 (-)
G144124 NA non-coding upstream 1057779 8916491 ~ 8921153 (-)
G144142 NA non-coding upstream 1281907 9140619 ~ 9141972 (-)
G144205 NA non-coding upstream 1558820 9417532 ~ 9418417 (-)
G144206 NA non-coding upstream 1561790 9420502 ~ 9420880 (-)
G143659 NA other downstream 2074166 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 3740936 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 4640121 3120229 ~ 3217229 (-)
G143145 NA other downstream 5147346 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 7210739 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 495277 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 977648 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 1014173 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 4276666 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4485959 12344671 ~ 12348328 (-)

Expression


Co-expression Network