G143923


Basic Information

Item Value
gene id G143923
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7873613 ~ 7874434 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181008
TGCCATTTcacaaacatataaatacattttaatttatgacaggtcatacatatacagttagtACGGGAATGGTCTCCTGTTGATGTAAATCTTTTGGGTAGTTCAAGCTCTGAGGTTTGGGGGTTTGAGTACACAATAGTTTAATAGAGTGTTTCTGTATAGTTCAAATAAACTGGTCTGAATTCTGAAACCATGTAATTAATAAACTCATAGACACACCCAAAACCTCAGAGCTAATAATCTCAGTATTTTCACTTCATGTGGTTAGTGTGAAAAATAGACCAATTCCcatgtactttattttcaagTCTCCTTATCAAGGAGGATACACTGGAAGTCAGGTGTAATCCAGTAATGATTATTGCAGTGTATGAAACTCCTCCAGAGAGTAATCCTGCTGGTGGGGGGTTGGTCATACAATCACACCAATGATTCACATACAGGTTTGCCATTAAGCTGCATTACACTTGATAATGATGTGAAGACCTGCCCTGACTTTCTGTAAATGGCTGCCTGTAAATGCAGGAATCACAGCCAATCATTACACATTAATTTAGATCACTCAAGACCAACCAAATCATATTCATTCTAACTGGGGATTAACACATTAGGAAATGAGTCAGACATTTAGTAACTGATGTGCTTATGGCAtgcataggcataggtttagggtCCCTCCCCAGTGTTGAGAGAacattaaattgtccccccTAGTAGGGGCACTTTCTACCAATATTCAGCATCAATAAATTGCCCCTAAGCATAATTTAAGTGTGGTACTTCCCCCCCCCttcaaacacattaattaaaagtcgttattta

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU181008 True 822 lncRNA 0.38 1 7873613 7874434

Neighbor

gene id symbol gene type direction distance location
AMCG00004867 NA coding upstream 2760 7742678 ~ 7870853 (+)
AMCG00004871 NA coding upstream 156135 7701969 ~ 7717478 (+)
AMCG00004869 prkacb coding upstream 207176 7648790 ~ 7666437 (+)
AMCG00004863 adgrl2 coding upstream 654558 7190355 ~ 7219055 (+)
AMCG00004862 adgrl2 coding upstream 694710 7167992 ~ 7178903 (+)
AMCG00004882 NA coding downstream 32742 7907176 ~ 7936127 (+)
AMCG00004881 cef10,cyr61 coding downstream 218377 8092811 ~ 8094461 (+)
AMCG00004895 NA coding downstream 414794 8289228 ~ 8294685 (+)
AMCG00004896 NA coding downstream 424023 8298457 ~ 8323043 (+)
AMCG00004897 LOC107700566,LOC107710622,LOC107578300,LOC105022607 coding downstream 459337 8333771 ~ 8345890 (+)
G143772 NA non-coding upstream 1238203 6635058 ~ 6635410 (+)
G143721 NA non-coding upstream 1372892 6500236 ~ 6500721 (+)
G143630 NA non-coding upstream 2411759 5461492 ~ 5461854 (+)
G143526 NA non-coding upstream 3015449 4852163 ~ 4858164 (+)
G143447 NA non-coding upstream 3621524 4251709 ~ 4252089 (+)
G143962 NA non-coding downstream 104212 7978646 ~ 8049310 (+)
G143970 NA non-coding downstream 135097 8009531 ~ 8012018 (+)
G143997 NA non-coding downstream 226592 8101026 ~ 8101339 (+)
G144082 NA non-coding downstream 919243 8793677 ~ 8825780 (+)
G144111 NA non-coding downstream 977811 8852245 ~ 8852446 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 139554 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 181252 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 249543 7608901 ~ 7624070 (+)
G143626 NA other upstream 2449492 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 3501524 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 1825733 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 2073976 9948410 ~ 10015424 (+)
G144677 NA other downstream 3788247 11662681 ~ 11663368 (+)
G144940 NA other downstream 4906146 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 6280721 14155155 ~ 14188329 (+)

Expression


Co-expression Network