G144205


Basic Information

Item Value
gene id G144205
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9417532 ~ 9418417 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181346
CTCATACTCACCACACTGCTCTCAGTTTGCAGGCCTGGGTTTTGCTCAGCTTCTTCCAGCAAGACATACTGCCCTCTGAAAAACTCCAGGACCCTTGAGGTCAGCAGCTCAGTCTCTTTTTTCAGCACTTGGTAGTCAGGCAGCGGGGCAGACGGCCGAGCCCCTCGTGAGGCAGGACCAGAGCCGCCCACCGCCAACTCCCCCTCCCACTCCTCCAGGTCGTCCTCGTCCAGCTCTTCCTCCGGCTGGGCCAAAGCCTCCGCGGAATCTGTTGGTTTATAGTCCGGCCCGTACAGGAAACGCAGTGTCTCTTGGGTCTTCCATTCGCTCAGCGTTCGACTTAAGGTCTCCAGCAGGCTCCTTCTCACCACAGACGGAGGCGCCTCCCGGTCCAGCCTGTGTTTCGCGAGGAGACCCTTCAGGCCCTCTGCTCCTTTCTTGCTGACGCCGATGCACGTGATGTTCAGGTCCTCAGGCGTGTCATTTTTAGTTTCACGCTCTGGGTCTGTGCGTCTGTCCGCTACAGGCAGCCCCACACTGTTGTCCTGCTCTGGTAGACCAGCGGTGGTGACCTGACCTTCAGTGCTGGCTATTACACACTTGCTCAATCGCTCCGTggcctcctccaccacccccaCACCTCCGCCGGGTTTCTCCTGTGCACTCCTGTGTCGCTCAGTCTTATCCGTGGGGGGGTGCTTTCCGTGCCTGGGCCCCACCCTCCCTGCGGACACCATGCTGGAGATGAACTCTTGCTCGGGCTCGCTGCTGTCACTCTCGGTGGCCAACAACGGCAAGTCAGGGCGCTTCTCCTCCAGCAGGGGGGGATTCTCGATCTCTGACACTGATAGTGGCTTGTCAGCTATCTGCACCTCCTCTCCCAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181346 True 886 lncRNA 0.60 1 9417532 9418417

Neighbor

gene id symbol gene type direction distance location
AMCG00004916 NA coding downstream 7082 9402791 ~ 9410450 (-)
AMCG00004912 NA coding downstream 130046 9281194 ~ 9287486 (-)
AMCG00004911 NA coding downstream 149311 9225651 ~ 9268221 (-)
AMCG00004902 NA coding downstream 265085 9139161 ~ 9152447 (-)
AMCG00004901 barhl2,LOC102777546 coding downstream 341446 9072340 ~ 9076086 (-)
AMCG00004917 NA coding upstream 13960 9432377 ~ 9457795 (-)
AMCG00004920 evi5 coding upstream 58420 9476837 ~ 9515322 (-)
AMCG00004919 NA coding upstream 134648 9553065 ~ 9558253 (-)
AMCG00004922 gadd45a,LOC106568974,LOC107678351,LOC107555372 coding upstream 338810 9757227 ~ 9760024 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding upstream 424501 9842918 ~ 9847710 (-)
G144142 NA non-coding downstream 275560 9140619 ~ 9141972 (-)
G144124 NA non-coding downstream 496379 8916491 ~ 8921153 (-)
G144072 NA non-coding downstream 888625 8527531 ~ 8528907 (-)
G143922 NA non-coding downstream 1558820 7857350 ~ 7858712 (-)
G143860 NA non-coding downstream 1691367 7722188 ~ 7726165 (-)
G144206 NA non-coding upstream 2085 9420502 ~ 9420880 (-)
G144208 NA non-coding upstream 21309 9439726 ~ 9440310 (-)
G144209 NA non-coding upstream 22883 9441300 ~ 9442501 (-)
G144241 rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809 non-coding upstream 128786 9547203 ~ 9551306 (-)
G144286 NA non-coding upstream 264635 9683052 ~ 9684119 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 510938 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 569757 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 1040531 8353989 ~ 8377001 (-)
G143659 NA other downstream 3634348 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 5301118 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 2716961 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 2926254 12344671 ~ 12348328 (-)
G145046 NA other upstream 3917792 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 5545997 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 6084665 15503082 ~ 15535145 (-)

Expression


Co-expression Network