G144218


Basic Information

Item Value
gene id G144218
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9464141 ~ 9466613 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181359
atttcaagTTAAGAACTCAATAGTGTTTTGTCATTATGATTTAGATTGTGATGTTAAACTGCTAGTGTTAACAGCAAAGCATGTCTACCACACCATGAGCTGGTGCCCTCAATCCTGTGCCAGTTCTATGGATGCATTGTTCAGAGTTGCTCAGTGCCCTGCCAACCCCACACAGTCCACAGTGGGCAGAGCTCATCTCACCCAGCTCTCCAGATCCCATTGATTggttacattcttaaaaatactAGACCGAAAAATGATAGAGAAATATAGTGCCACTATAGTGTATTGCATTTGGATTAGTTTCATTACTCTTTGGAAATATTTCtgggaggggaaaaataaacattttttgctACAGAGCTAAGCTGGTTGCcattttctgaatattattCTAAATTTAAAGTTGAAAACCAAGcaacagacacagaaaacagaaatcgaatggttgttttgttttctgttaatcTTCCCAGGCCTTACTCTCTGAAGAAGCCCTTTCACCAGGAGACGTGAAGGAGGAGAGCAGACTCTGAGGCTCTGCGTGTGGCCACTGTGTGCGGTCTGGAAAGCTCAGGCAATGCAATGGACACGTACAGGTCTCAGCTCTGGGGCAGAGGAACAAGAAGCTGACATTTccagaataaaaaacatctttaaaaacaatgGGTTTTCTAACCAGGCTTGGAAAGGGTCTGAGGGCCACGTTCAGGAGAAGCACATTAATTAATACTGCCAGCGTCCAAGTGTCCCTGCTCTCTGATCAAGGTGCAGTCTATTGAATGGCAAAGATATGTACACTGGACTGATTTTGGCAACAGTAAGGCAGACGaaatgaaccaaaacaaaaaaacatgttacagtCTCTTAGGTTACTCTCCTCAGTTTATTAAAAGATGCCCGACTCCAAAGCTCTTCCTGTTGGAACATCACATATCCATCTAAAGGAAGGAAATCTAGAACAACCCCCCAACAATCCACTgatgaattatatataaaaaaaaaaaaaaagcatagaaAAACCGAGACGCAACAATTCCCAAAAGCCTCCTGGCCGCCTGTGCCCTCCGCGCCATCACACCGTGGTGGAGTACGACTCCTTCTTGTGGTTTTGCTGCAGCTGGCCCTCCGTGGGCACAGACAGGCTGAGACTCTCATCATCATTGTCGCTGTCTGTGTCTCCGAGGTTGGGGTGCAGCACGATCCGGGGGATCTCCCGCCGGTGGTCAAAGGGGTGAGAAACGGCACGCAGCATGTCCTTGCCGATGGAGTTGGACATAACGTCTTCGTCCGAGGAATGGTAGGACTCGTCGTCCCCTATATAGTGGTTGACTATATGGATTCCATCAAAAGTGGGTTGGTCTGACAAGCCCCTCTGGCCGTTTAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181359 True 1390 lncRNA 0.45 2 9464141 9466613

Neighbor

gene id symbol gene type direction distance location
AMCG00004913 NA coding upstream 45618 9411904 ~ 9418523 (+)
AMCG00004915 NA coding upstream 61934 9399796 ~ 9402207 (+)
AMCG00004914 NA coding upstream 66704 9359900 ~ 9397437 (+)
AMCG00004908 ephx4,LOC106584162 coding upstream 108452 9346848 ~ 9355689 (+)
AMCG00004907 brd3a,brdt,LOC107686882,LOC107675431 coding upstream 120449 9325540 ~ 9343692 (+)
AMCG00004918 LOC103464060,LOC101078338,LOC103368809,LOC106584167,LOC101169281 coding downstream 80615 9547228 ~ 9553629 (+)
AMCG00004926 NA coding downstream 116788 9583401 ~ 9593194 (+)
AMCG00004925 NA coding downstream 127408 9594021 ~ 9618789 (+)
AMCG00004927 NA coding downstream 166224 9632837 ~ 9646412 (+)
AMCG00004928 LOC103368644,LOC107091536,LOC106920129,LOC103463988,LOC103139842 coding downstream 180853 9647466 ~ 9651063 (+)
G144210 NA non-coding upstream 15608 9447589 ~ 9448533 (+)
G144195 NA non-coding upstream 20247 9443656 ~ 9443894 (+)
G144141 NA non-coding upstream 290992 9172905 ~ 9173149 (+)
G144139 NA non-coding upstream 293892 9169995 ~ 9170249 (+)
G144137 NA non-coding upstream 318288 9145454 ~ 9145853 (+)
G144227 NA non-coding downstream 27883 9494496 ~ 9500978 (+)
G144237 NA non-coding downstream 87487 9554100 ~ 9557475 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding downstream 376816 9843429 ~ 9847756 (+)
G144512 NA non-coding downstream 1529769 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 1669144 11135757 ~ 11139343 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 1730082 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 1771780 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 1840071 7608901 ~ 7624070 (+)
G143626 NA other upstream 4040020 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 5092052 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 233554 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 481797 9948410 ~ 10015424 (+)
G144677 NA other downstream 2196068 11662681 ~ 11663368 (+)
G144940 NA other downstream 3313967 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4688542 14155155 ~ 14188329 (+)

Expression


Co-expression Network