G144237


Basic Information

Item Value
gene id G144237
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9554100 ~ 9557475 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181382
TTAATGTATTCTGCTTATTTAATTAGTGGTTTAGTTTCAAAATATTACTTGTCGAATTACCTTGCTATTGAGTACAgaaattaattcaaatcaaatcctgctCATTATTATGTCAGATTAAATAAGAACGGATACATGAATACATGCAATTTTGATTATCTCTCCAAGGTATTGTTATAGTGCAGGCACCTTCAAGTGACTGAAGACCATCTCTTTGAACTTCTCCACAGACGTGCCCTTGGTGGGCTTGTCAAACAGCACAGCTTCCCTCCTGGGTTCCATCTCGGCCCCCAGGTCGTAGCGAAGGATTTCCTCCATCTGACACTTGATCACGCCTTCCAGATCCCCCCAGCTGCCCGTGTACACCTGCACGAGCACAGAGCACGGCAGCCACACGTTACCACATGCACAGACCCAGTTTAGCATATGGGATGGGTTTATATTGTAGTACTTTAATGGATTATACGCATATAGGTACATAATTGGTTATTTCAAGCATATTGTAATCTTTCACCTCGACTGTTGCAACTCATGCTATGTACTATCAGTTAAATAGCAATAGTCATCTTGAGCCATAACTGGTCTTATCTATTACTTAGGTTGACCCTGTGGTGTGTGGGGTCAGACCAGACCTCAGTACCCCCGTGTTCAGGTGTCTTATGGAAGGAGAGCAGGGTCCTGACCTGGTTGTTGGGCTTGGCTGAGAGGCACTTCCCCAGGTACAGAGTCTCCTTGTCACACAGGCTGCTGCAGGCCGAGCCGTCAATCACCCCCTTCCTGTATttatcacactgacacacaaacagcatCGGTCAACGCTACGGTGACACATGGGAGAACTGTCATTTTCACTTCAAAGAAACTAGATTGCACATTCTTTTCCTGCCTTCAACCACTGAAAAGCAAAAACCTAACCAGATCTAGTCAGtaaaaaacgaaaaataaaatattcagttgtCTTTACATAGATTCTCCAGCAGGTGGACCTATTTTGCAACTTGCATGGTACCTTTGATACTCAAAAGGTGCTTTAATTGTCATTCATGTCTCTTACTAACCAGACCTTATGTAAATCTCCCCATGTGGGTGCTGTACATGTGTGCACATTGTTAGAGTATCTGTATCTGGATTCAATCTACTTTCACTTtctttgttgcattttaaaacccTAATTCATAAATAGATTGATGCACTTGAATGCAAACTTAGGCAACTAAGATATTGCTTTTGAATTGCGGTATTATATAATATGTTCTAGGGATCAAGCTGTGTGAAGTGTGTTCTTGAACAGTTAAAAAGgatttgaacatttttattctgCATCCAAATACAGTAATAGTTCAATGTTACACAATCAAGGCCGACGGTATCTTTCTCAATCCTCCACTGCTTCAAATTAACTACCCTTAAACACGGTGAATTCACTTCTAGGCAGATTTTGCACCCGTGCCAATAGCTTTGCATTTCATtgcatctttaaatgtattgtcgTTCCCCTGAGACACAGAAGTAACGCAGGGAAGTTAGTGTTACAGAAACCGATACCTAGAAAATATAGTCATTTCGAAAGCTGAAAGATGTTGGAGTAGTACAGAAAAAGCTCTCTAAAGCATTCAGTACATCTACTTAAGAATCGTAAATTGTCCATTTTAACTCAggaagaaatgtattattgtagaACTTCTTGCCAAGCTCTTAAAATCCAGTTTTAAAGCCTTGCCTTGGTCGATCCAATGGACAAGGTCAGTCTTTTTGAGTCGATGCTTTCGTACAGTGCTTTGAGGTCTCTACAGTGACCtccattttatttctatttgagACAGGGACTGGTATTGTGTGcgggggaaacaaaaaagcaatccAGTAATGAGCTTGAGTTTACATTGCTGCTGGGAGGAGGACACTGACCTTTCACTCTTAGAACAAACCCAGATTGTTCTCCTGTTGCATCATCATAAATGAACACACAAGGAATGCTGACAGGGCTGGATAAACTCCATCATTTCTTCCTCTGGCCTCCTTCCCAAGCGCAGGCCTTTCGCATATATTAAACGGGAATGTTGTTTTAACTGGATTTGCTCCTCAGTAAAGGCCATCCATTGTGATTTAGGACCTTCAGGCTAATGTTGACCCTACTGACACGTGCTATATTTGGCCGGGTTGACGGTGCATGCGAATAAACCGCGCCAGCATCTACAGTCACTTCTGTGCGAACGAACAGGAGCTGATAGGACAGCATCCAGGAACGTCTCATCATCATGAGGCAGCAGATGAGCATAACTGACCCATTTCAATTCAGCGTCTTTTCATCCACATCAGTGAGCTTTGAATATTTTAGACAGTGAAGGGTTCCTTTTTTTACAGAGAGATTTCTAAAGCATTACTATTTCATAGGCTGATAAGAATTAAGGCGCAAACATAAGCCAGCAGTCACTGaagtattaaagtgtttttgtgtgtgagtgtgagttttttttctcattttgaatAAAAGGATAAAGGCATTCTTTGCTATAGCttttggtattaaaaaaaacgtCATTTGTTGGCATTTCTTTAATTCCCAACAGAATAAAACATCCCCATCTATTTTACAAGCCATCTCCTCAAAGCAAAGCTGTTGTGCCCTTTGTTTTTTAGATGAAAAGCCAGGTTTTGAATGGTGTAACAAACCAAATTCACTGACAGACGTTCTGAACTTTGCTGTGTCCTCAGACAGGTCTGCTGAAGGGGAAATTGGTTACGGTGCTGATTCAGAAGGAACCGGCGTTTTGAGAGAACAAATGAGCTTGAAAAACTTCCCTAGACCTTGCAGGGAGCTAttcttacattttctctttcttttaaaaataaataaatatgaattttgACTTAAAAGATCAAAATGATTAACTGTGCCTCAATCTGAAGTTCccttaacatttaaatatgtgttcaaatgtattgtcagtgctgtgtattactttaaaatgtcttactTGGTTCAAATCAAATCGCAATACACTTCTAATGGGGAATAAAGTTGTGTAAAGTGGCTTGTAGAGTTTGTACAGTTTATGCAAAACCAATATTTGGGGCTTATAAAGAAGAGCTCATTTTCACTGTTCTTAGGAATGTGCAGTCGTGGGCTGTGCGTGCCGTCTCGGGGTGTGTTTATGGGACAAAGCCCGGGATGGAAAATAGTGCTGCGATTCCAAGTGAAAGACGATCGGTCGCCCTGTCCCGTCCAATCAGTACGTACGATGGTGTTCTTGCAGTCGTGGCCCCGGCACAGCTCGGTGTAGGTGGAGTACTGGACGTACACCACCCAGCTGCCGATGAACACCGCCAGCCACGAGAAGAAGAAATATTTCATGCGCAGGTAGGAGAAGCGAGC

Function

GO:

id name namespace
GO:0032446 protein modification by small protein conjugation biological_process
GO:0070647 protein modification by small protein conjugation or removal biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181382 True 3376 lncRNA 0.41 1 9554100 9557475

Neighbor

gene id symbol gene type direction distance location
AMCG00004918 LOC103464060,LOC101078338,LOC103368809,LOC106584167,LOC101169281 coding upstream 471 9547228 ~ 9553629 (+)
AMCG00004913 NA coding upstream 135577 9411904 ~ 9418523 (+)
AMCG00004915 NA coding upstream 151893 9399796 ~ 9402207 (+)
AMCG00004914 NA coding upstream 156663 9359900 ~ 9397437 (+)
AMCG00004908 ephx4,LOC106584162 coding upstream 198411 9346848 ~ 9355689 (+)
AMCG00004926 NA coding downstream 25926 9583401 ~ 9593194 (+)
AMCG00004925 NA coding downstream 36546 9594021 ~ 9618789 (+)
AMCG00004927 NA coding downstream 75362 9632837 ~ 9646412 (+)
AMCG00004928 LOC103368644,LOC107091536,LOC106920129,LOC103463988,LOC103139842 coding downstream 89991 9647466 ~ 9651063 (+)
AMCG00004923 dr1,nc2b coding downstream 96109 9653584 ~ 9658003 (+)
G144227 NA non-coding upstream 53122 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 87487 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 105567 9447589 ~ 9448533 (+)
G144195 NA non-coding upstream 110206 9443656 ~ 9443894 (+)
G144141 NA non-coding upstream 380951 9172905 ~ 9173149 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding downstream 285954 9843429 ~ 9847756 (+)
G144512 NA non-coding downstream 1438907 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 1578282 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 1640838 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 1687127 11244602 ~ 11247808 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 1820041 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 1861739 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 1930030 7608901 ~ 7624070 (+)
G143626 NA other upstream 4129979 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 5182011 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 142692 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 390935 9948410 ~ 10015424 (+)
G144677 NA other downstream 2105206 11662681 ~ 11663368 (+)
G144940 NA other downstream 3223105 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4597680 14155155 ~ 14188329 (+)

Expression


Co-expression Network