G144241 (rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809)


Basic Information

Item Value
gene id G144241
gene name rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9547203 ~ 9551306 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181391
TTTGGCAGTACAAATTTAATGAGCACAGTGCCATTACTGGACCACACACAGCTTTCTTTTCCGATAAATTTATTagaacaaagcatgtttttccATCGGTAGTAACAGAGGCTACCACTTTAGCTGTCGGCTGCAGCCTGTTCCTGTGCACGGAGGAAGCTGGCCTTCTTCTGAGCGACACGGTCCTTTCTCTGAGCCAGGGACAGCTTGGCACGGTTCCACCTGGGGCACGGGGGACACAGAGGAGTTCGTCAACATCAACACCCACATGGCCAGTCAATACAATTCACTCAGACAAGCAAATGCTCTGGAAGATCTCATTTCAGACTGAAGCTTACTGGATAAAAGAGACCATGTTCAGCACAAAGTTTGACTAATGAAAGCCTGTCAATTTGAGAAGCCAATTGCTGCATTTCAAGCTGCACCCACTGATGTTGTACAGTTTACAATTCAAGACTAACTGTTATaccaaaaacatgtacatttcgTTTAAAAGTCTTGGAAAAGCCCAAGGCTTCAGTATTAAAACAATTCTAGAACACTTGCTCATAATTACACACAGGGTTCCACTTAAAGAGTCTACTTCAATGTCACTAAAATTGACAGATtaagttaaatgaaaaacaaacctcttTTTCTTGACTTCTTTCTTGGGCTTCTTTTCATGGACTGGATTCTCACGGATAGAAGCATGCGCCTTTTTGTACATGTCTTCCATTACCTGGTCTGGAGTCACTCCGTTCTTGATGGCCTTGGAGAACTGCTTTTTGTAGGCATCCTCGTCTTCATCCATCAGGTAGCGCATGTATTCAGCCACGTTCAGGCCCATGATGTGCTTGCGGTGGACCTCTGCGTTGAACTCTTTGCTTTCCGAGTCATAACCAGGGAAACGTTTGGTCTGTGAGGGATGGAGAGTCCTCCGTCCACTGCACCTTTCAGAGCACCGAACACTTTGTTGCCAGTAGTGGTTCTAGCGAGCCCAGCGTCCAGGTAACACGTGAAAGCACCGGGTTTGTCTTCGATGCTTTCCACGTTGTACTCGTCTCCAGTCACCTCCACCTGGCCCTCGTACACCTTGTCCAGGCCGAATTTGTTCAGCAGCTACAGGGAAAGGAAATCCATTCAGAAGTCAGTACAGATGACCTCCATGTGTGATACTAACATTGAAGACTTTTAAAGGGGCACATTAAGCATTCACATGTCACTAGCATGTGCAAATTAAGTGTTCTAAACAAACAGAGTGCAAAACGTGTCAATACTGCATTACAATTGCAAGTTGAGACATTATAGGCAGCTCAAATCACAGCAGAGCATTCCATAAATCTCTCCTAAACATCCTTTTGCCACCTCCCACTTTACCAACATTTTTGCTGATACACTGAAGTCAGAGAAAGGTTATCATACTGAAATGAGCACAGGGTACAAAAATCtgacctgcccccccccccaaaaaaaactaGGTTTGTAAAACCCAAACCTCAATACACTTGCTCTCAGGTCTAACACTAACTTCAGATTCAACATACCAGAGGCCTACAGGTTGGTGAAACCGAGGGACCAAGGGCCAGGCTGCTGCAGACTTTTTCCAACCTCATTATAGCAAACCACTAACCTGG
>TU181395
CCTGGCAGATGATGTCCCTGTTGGTGAATCTGACAATCATCCTGTACTTGGGTGTGTTGTACTTGTTCTTGTCTTGGACAACCAGGCGCTTGCGGGCAAAGTAGTCAGTTTTTCcctCTCTCCTCCTCCTGAACTTCACCTGGTACCTCTTGAAGTACGACTTGTTTTTAACTACTTTTACGAAGCCCATTTTTCAGTCTTTTCGACCTCCGTTAGCCGGGAGACTGGAGTCTAAAGACTGGGGGTTAGACTCCGCTGCACTGGGAAAAGAAAGAGCGTAGTGCGCATGTCCGGTAAATACGGTCGCGACAGCACTGAAGCGCCGCAGTCGAAACTCCCGTGACTGCGC

Function

symbol description
rpl5 Enables RNA binding activity; ubiquitin ligase inhibitor activity; and ubiquitin protein ligase binding activity. A structural constituent of ribosome. Involved in several processes, including protein stabilization; regulation of cellular protein metabolic process; and ribosome biogenesis. Located in cytosolic ribosome; endoplasmic reticulum; and nuclear lumen. Part of ribonucleoprotein complex. Implicated in Diamond-Blackfan anemia 6; T-cell acute lymphoblastic leukemia; and glioblastoma.

NR:

description
60S ribosomal protein L5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181391 True 1616 lncRNA 0.45 3 9548790 9551306
TU181395 False 349 lncRNA 0.51 3 9547203 9548406

Neighbor

gene id symbol gene type direction distance location
AMCG00004920 evi5 coding downstream 31881 9476837 ~ 9515322 (-)
AMCG00004917 NA coding downstream 89408 9432377 ~ 9457795 (-)
AMCG00004916 NA coding downstream 136753 9402791 ~ 9410450 (-)
AMCG00004912 NA coding downstream 259717 9281194 ~ 9287486 (-)
AMCG00004911 NA coding downstream 278982 9225651 ~ 9268221 (-)
AMCG00004919 NA coding upstream 1759 9553065 ~ 9558253 (-)
AMCG00004922 gadd45a,LOC106568974,LOC107678351,LOC107555372 coding upstream 205921 9757227 ~ 9760024 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding upstream 291612 9842918 ~ 9847710 (-)
AMCG00004933 med8 coding upstream 493910 10045216 ~ 10049989 (-)
AMCG00004937 NA coding upstream 563692 10114998 ~ 10123827 (-)
G144209 NA non-coding downstream 104702 9441300 ~ 9442501 (-)
G144208 NA non-coding downstream 106893 9439726 ~ 9440310 (-)
G144206 NA non-coding downstream 126323 9420502 ~ 9420880 (-)
G144205 NA non-coding downstream 128786 9417532 ~ 9418417 (-)
G144142 NA non-coding downstream 405231 9140619 ~ 9141972 (-)
G144286 NA non-coding upstream 131746 9683052 ~ 9684119 (-)
G144292 NA non-coding upstream 148008 9699314 ~ 9700409 (-)
G144295 NA non-coding upstream 193563 9744869 ~ 9750778 (-)
G144353 NA non-coding upstream 386674 9937980 ~ 9938611 (-)
G144502 NA non-coding upstream 1404779 10956085 ~ 10958001 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 640609 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 699428 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 1170202 8353989 ~ 8377001 (-)
G143659 NA other downstream 3764019 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 5430789 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 2584072 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 2793365 12344671 ~ 12348328 (-)
G145046 NA other upstream 3784903 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 5413108 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 5951776 15503082 ~ 15535145 (-)

Expression


Co-expression Network