G144286


Basic Information

Item Value
gene id G144286
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9683052 ~ 9684119 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181451
CTTTGagcaagttttaattaaatcctaaacacacaaacatgtccatgattttgaaaaaatactAAAAGCCCTTTCTTTTTTAGCAATTCATTCACAGAGCATGAGTTGCCTGTAAGTTACATAACCATTGTGCTGAAGATAGACCAACATACACAAGACTTGGGAGTTttagacaaaaacaacatgactCACTAGAAGCAATATAATAAGGAATGCTTTGTAAACTAGTCAATGATAAAGCTTTCTGATCAAAACATACCAGAGtcccatttcttttaatttgtcctgCATTGTGTGGTTGCTTTTTTAGCAAATGTTAATGTGTAATGTTCCCGGAGTAATAACGTTCTACCAAACTTTACCTAATCCATTAGAATCCACCAACCTATAAACACCATCAGAAGTTGTGAATTAGCATAGGCCCCATTCTCCCATAGTATTGCCGTTACAACCTCCGTCTTCTTTGTATAAAAAGTAGAACTGGTCATTGTTAAAGTGGAATTAGAAGCACCGCCCACGAATTTAGTTCTGCTCATCGATGCAGTCTTTGCCTTCGAAGGGTAGCCAAGATACAGGGCAATTGTGGAAAATAAAGTCAAGAATTTAGTGTAAACAAGGGATACATGATCCTAAAGGCCATGAGGGATTGTCAGCTGAATTCATGTCTGCACAAGTGGTATATTTATGCACACAGCCATCAGCAACTTGTGGCCTTTTACAGCCAGTGCAGAGAGGATGCAACAGAGGTGTAGAGAGGTCTGTGCAGCCTGGACAGTAGATCTGTGAAAAGCATCATCTTGATTGCGCCCATTGGAGATATTCGTGGGGCTGGTGCTGCACACAGATGAGCACATGGAGGCCCATGCTTCATGTATACACAGTGTAAACAAAGACGCCTTGAAACTCAGATTATTCTCTGCTTGAATGGACCATGAGCACAATGATCACCACAAGGTGTCGCCACTGTATTGTATAGTGTTCAGCTGCAACAGTGTCAATGTGCTAATGGTTGAGGACTATACCAAAACAAGTGGGGGgggattaaatacaaaagccacccaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181451 True 1068 lncRNA 0.40 1 9683052 9684119

Neighbor

gene id symbol gene type direction distance location
AMCG00004919 NA coding downstream 124799 9553065 ~ 9558253 (-)
AMCG00004920 evi5 coding downstream 167730 9476837 ~ 9515322 (-)
AMCG00004917 NA coding downstream 225257 9432377 ~ 9457795 (-)
AMCG00004916 NA coding downstream 272602 9402791 ~ 9410450 (-)
AMCG00004912 NA coding downstream 395566 9281194 ~ 9287486 (-)
AMCG00004922 gadd45a,LOC106568974,LOC107678351,LOC107555372 coding upstream 73108 9757227 ~ 9760024 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding upstream 158799 9842918 ~ 9847710 (-)
AMCG00004933 med8 coding upstream 361097 10045216 ~ 10049989 (-)
AMCG00004937 NA coding upstream 430879 10114998 ~ 10123827 (-)
AMCG00004942 NA coding upstream 1210819 10894938 ~ 10896806 (-)
G144241 rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809 non-coding downstream 131746 9547203 ~ 9551306 (-)
G144209 NA non-coding downstream 240551 9441300 ~ 9442501 (-)
G144208 NA non-coding downstream 242742 9439726 ~ 9440310 (-)
G144206 NA non-coding downstream 262172 9420502 ~ 9420880 (-)
G144205 NA non-coding downstream 264635 9417532 ~ 9418417 (-)
G144292 NA non-coding upstream 15195 9699314 ~ 9700409 (-)
G144295 NA non-coding upstream 60750 9744869 ~ 9750778 (-)
G144353 NA non-coding upstream 253861 9937980 ~ 9938611 (-)
G144502 NA non-coding upstream 1271966 10956085 ~ 10958001 (-)
G144587 NA non-coding upstream 1569496 11253615 ~ 11254574 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 776458 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 835277 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 1306051 8353989 ~ 8377001 (-)
G143659 NA other downstream 3899868 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 5566638 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 2451259 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 2660552 12344671 ~ 12348328 (-)
G145046 NA other upstream 3652090 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 5280295 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 5818963 15503082 ~ 15535145 (-)

Expression


Co-expression Network