G144534


Basic Information

Item Value
gene id G144534
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11135757 ~ 11139343 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181765
TCAGTACTTTTCATTAACTAAATTTCTTAAGATGACCAACATCAATCTGCCGAGGAATGGGACCGAAGGTATGAGAAAAATACCAGTCATCTTGCATTAAAACGTTTTaatacagagaaagaaaaggtcAATCAGTCAGAAATCAAAGAGAGCATCCATTTTCATTCCTACACACAAGAACGTaacaaatgaaacattaatGTGAGCTCCACAGAGGCATACAAACATCTCAGAAATGCATCACATTAGGCATAATGTATTCTGTGTTAAGGATCCACATGAACCAAAATCAGtctttgcaaagaaaaaagggCCTAACCTTATCTTTCTCACAAATCATGATGACAACGTCGTCTAGATGGAAGTTGAAAACGTTAATAAAAGCCATCGAATTCTACATCGCCACTTCAAACCACAACAGTCTTCTGAGAGGGGAAAATCATACTCCCAAATCGTATAAATACCACCCACTAAGTCCCAGCAATAcagaatgcatttaaacatcTGAAGTTCAGGGAAGGTTCAGCCAAGTTCATTCGCTGGACATGTAAGTTCAGTGTATTATATGATGAAAGATAATTTACTCTTTGTATCTCAAACAAAGAGCATCAAAAAAGGAAATCAGAAATATGAGAAACACATTTTAGCCCAGCTTCTCTACAAATAGTAACGCACTCAGGAACGTACTCTCtaaagcaggggttttcaaaccggtcctggagttccccctgccctgctggtttttgttccaaccgaggtcttaattgcttaattgaatccttaattgacctaacaaataaatataccattcaattaaataattaagacctaggttggaacaaaaaccagcagggcaggggatactccaggaccagtttgaaaatcCCTGCTCTAAAGGAACAAATTCTCTCTTATGTACTCAAAATGTATTGCTAACTTTAAAAGGCAAACATTAGGTTACTATACAGTTCCAAAATAGCTTATTTTAGATATTATTATAGTCAATTTGTTCAGCTTAAAACATATTCccagtactgtgcaaaacagTCAGAATTCCTTATCAAATAGGTTTTCATATTTGTTCAAACAAAATGGCAAATTTCCtgagaaggaaggaaggaaggaaggaaggaagaaacaaaaaaagaagaacaacgTTATCCATTACCTCTTCCCATTAGATAAATGTACTCTATTTCTAATGTATCAGCAGGTACTGATACAATTCACCAACACCAGCCACTGATTTGGTCAGTACTTGACTGACAAGCTTCAGATGAACACACAATAGATATTTTAACACACGGGGAAACACTTAAAACACCACAACTTTTTAATGCCTCAGTTTTCAGAGAATTGTTTATGAGCAAATGGTAAACCCTGATGAGTTGTGCTTTAAAAGAATAGCAAAGAAAccctgaaaatatatacataaaagaCTGGAAACTAAGAACAATTCCTTTCCTGCAAAAATGTCTTGAACAACTTTGACccacatacaatatatacatattgagagagagagcaggagtaATATGTACAGTCAATTCGATTTCACGTTAAGAATAtctaacaaaatattaatattttacaccGAAAGCAGTCATGTatcatacatataaaacaatgcaaaaatcGATATTGGGTAAGTGATAaggcaaatataaaaacaatactgaagTAGATAAAATCAAATCTGTTGGAAAGCATCTTTTTAATAGGAAGCCAAAGTTTAATTTGTGCAATACTGAGGTACTGTGCATGTTATTTCAATGATTGGCTTCTGTGCACACTGGAATACAAATCATAATTGTACCAACTTACACTTACGtccattgtgttttgtttttatcccaaAGGATACTGAAGCACTAGATATATTGGAGGAAACTCAATTTATCCAACACTGATATGAAAGGATTTTGGCAATAAACCTTGCAGTCCATTGGTGAAAGTACATAATATGTCCTTTCAGTATAATATCCTTCGCAGGTTTAAagatattactttaaatagacAGACAATGCCTGCCGCCTAAAGTACAACTGGCTTACTTATTCATTTCCCTTTCAAAGAATACCAacagaaatcattaaaatatctgatgaatgtttatttacttacattCAAACATCAggataaaatgcaaaatggctcatcaaagaatatataaaaatattaaagtgcttgtttgtttggtttgatgTTTTTGGTTATGTTTCTGCTGAAAAGGTTTTCTTAAgtcaagttaaaaataaataaatccaataaacctgtataaaacaattataaaataaaataaaaacagttaagaTCTGGGACTCACCATTTTAGGGCACAGGAAAACCTTcctttttaaaacctaaaatgaCTTTCCTAAAATAAGAGCTATAACTCTGAGTGGTTAACACTAAAACCGATTTTAAGAGCACAATCTGATTATTTTCTAGTATTCTAAACCTGACTTCTCCACCACATTAGCAGCAAACGTCTCATTGTCTTTAAATAGTTGCAAATGTAAAACCCCAAACCCTGTACAAGGCTACATATTTCTCATTGCTATATGCTCACTTACCATTAATGCACAATTGCCCAATTCACAGCTCGTTTTCAGAACAATATCGCATTCACacagttttataaaaataagCAGGTTAGAGGCAAGCGATCATGACATTCCTGGGATCCAGAGATTACGCACAATGAACGCCTTGTCACTGCCTGTTACTctgctaataaaaacataataatacagtaagtGATCGGTTACCAGCAACTTGAATTGCGTTTCAGCACGACGGCCTACTTAATCTGATTCTGGCCTGCTGCTTTAGCTTTTAAAAGTCATTTGTATCAATACCGAGTTGATTCACTGCCCTGTACGTACAGCAtacgttttatatattttcccagGTGAGGAAGTTTCAGCTCATTTATCACCAGGGCTGAAATGCACAAGAGATACCGTGAGGAGAAGATAAAGACCTGCAATAGACTTACCACTGGCCGGCACAACCAGGTGAACGCTAGCATTCGCACAACATGTTACAGTGCCGTCAAACAGCTAGGCTAGAACCAGCCCGGATGTGGCGGGGCGAGGCGGGGCGGTGAGGGGCATCAAGTGGCTTCGCCTCCGCCCGACACCTCGCTGGTCGATTGGAAGTCCTCGCGTTCCTCTTCGTGCTGGGAGAGTTGGCGGTTAAAGGCAATGGCATCCGCCGCAAACTGGGTGAGGTCTTTGGTGCTGCTTTTCCTGTAGAGCAGGTGGGAAAAAAAGACCATCATCAAACACGTGTctttaattgtgaaagatttaagCGAGACTGtttaaaagtgtgtatatatgattAGTATTGTTTATTGATCAGCAGTCgccccttacccagggtgacatATTACTCACTACCTTATGGTTACCTGAAACCATCACAAAGCAAGTCACATGTCAATGTAGGAAACACAATCTGACCAATATCAAGTTTGAATGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181765 True 3491 lncRNA 0.37 2 11135757 11139343

Neighbor

gene id symbol gene type direction distance location
AMCG00004950 NA coding upstream 126561 10999937 ~ 11009196 (+)
AMCG00004953 LOC107672656,LOC107393234 coding upstream 176974 10956236 ~ 10958783 (+)
AMCG00004952 rad54l coding upstream 185673 10943249 ~ 10950084 (+)
AMCG00004951 pif1,LOC104945614,LOC107700539 coding upstream 195113 10931893 ~ 10940644 (+)
AMCG00004940 NA coding upstream 255450 10877927 ~ 10880307 (+)
AMCG00004957 NA coding downstream 43914 11183257 ~ 11195427 (+)
AMCG00004958 NA coding downstream 62618 11201961 ~ 11214509 (+)
AMCG00004959 zfyve9 coding downstream 77849 11217192 ~ 11221581 (+)
AMCG00004967 txndc12 coding downstream 108797 11248140 ~ 11252830 (+)
AMCG00004970 NA coding downstream 170617 11309960 ~ 11314366 (+)
G144512 NA non-coding upstream 138151 10996382 ~ 10997606 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1288001 9843429 ~ 9847756 (+)
G144237 NA non-coding upstream 1578282 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 1634779 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 1669144 9464141 ~ 9466613 (+)
G144549 NA non-coding downstream 58970 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 105259 11244602 ~ 11247808 (+)
G144603 nexn non-coding downstream 189934 11329277 ~ 11331419 (+)
G144658 NA non-coding downstream 366339 11505682 ~ 11505883 (+)
G144668 NA non-coding downstream 431593 11570936 ~ 11577247 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1120333 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1384980 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3401698 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3443396 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3511687 7608901 ~ 7624070 (+)
G144677 NA other downstream 523338 11662681 ~ 11663368 (+)
G144940 NA other downstream 1641237 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 3015812 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4240256 15379599 ~ 15384811 (+)
G145932 NA other downstream 6625914 17765257 ~ 17771525 (+)

Expression


Co-expression Network