G144603 (nexn)


Basic Information

Item Value
gene id G144603
gene name nexn
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11329277 ~ 11331419 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181861
acatatcacAAATATTCTGGTTATacttaacattttgtaaatgttgtaaaaGTTGATTTGTTGCAGTTATTGGaatagaaaataactgaatgtatTCGCAGCAgagtttataattaaatatcaaaaccaAGGGTACAAGATGGCTTTGTTTAACATTCTCAAccttacaaaatattttaactttaaaaactGTTGAATGGTTAAAAACAATTGGTATGCCTCAAATGAACTTTGTGTACGGGATTTTCCTGATGTTTTTCCCGGGTCAAGTACCATTTGGGGTGATTTACCCAGTGTCTGGATTACACTTAAAAAGCTTGGAACAGATTTCTGCTGTATGGAAAATAGTCCATCAATGATTGTTTGGggtataaaactatttttagaaCTACGTTACATGTTAGTGATTCAGGAGAACAATCTGAAAGATACCTCTGGTTTGGCACAGTAACACTGAAAATTTTAGTAGTTTTAAGAGGAAAATTAGTTGTATGAAAAGGAGCAATACATGTAAAACTGCTGTGATTTTAACCAGTGGAGGAATGACACAATTGCCAGACATTAGAATTCTTATTGCCCCACCCAAAGAAAAGCTGGAGATAGACTAGAGAAATGAAGGACAGAGGGGAAAGTTCCAGTAAAGCAGGGCATCAGTAGTCCTCAgctagaaaagaaaagagagacagTTAAGAGAAGTAGAGGTGAAATGAGAAGTGTGTACAGAGTTATATCTCCCCTGTACCCTTAAAATGGAATGTAATGGGTGAGCAAACGTGCAGTCAGACCAACGGACGCTTACTTTCAATGGTGAGAATACAGGTGCTGGCAGCCGTGCCTCTGCTGTTCACTGCTTTGCACATGTATTCTCCCTCATCCTCAGGGAAGGTCTCTGGCAGATAAAGACAGTACGTTTCTCCCCTCTCAATGTACTGATAGTCCTCACAGTCCTGCAGCATTTCCCCTTCAAACCACCAGGTCACCTCTGGCTTGGGCTCTCCGTTGATTTTGACCGTAAATCGAACTGGTTCAGCGTCGACCACCGACTGGTTTTTAAGAGGCTTTTTAAACCACGGGGCTCTGGATCTCGCGTGATCCTCTTCGTCTTCATATGTTGATCCATTGACAATgctcccttcctcctcctcctcatcgtcctttttcTTGTAAAGCTGCATCAATCTCCTGCTGTTCAAACTGCATTCTCTGTAGTTTCTGCTCTTCgatcctctttctctcctcctcttccctggCCTTTGCCATTTGCTCAAATCGAGCCCGCATGTCCACTTTGTGTTTAAATGGAGCATCTTCTACTCGGGTGACTTCCCTTCTGCCCTCTTCATCTCTTCCTGGAATCTTTCGGCTTCCCTTTCTTTGATCTCAAGGTCGATAGCCTTCCTCCGTGCTCTCTCCTCCTCGATTTTCTTCTGAATTTCCTCTTCAGTGAGTTGCTTGATCTTTTCAaactttgattttaaattctTGGCTTGTATTGAGCCAGTTCTCTTCAGGTTCAACAATTCTTCATACTCTGTGCTTACAATTTcattgctttcatttatt
>TU181862
acatatcacAAATATTCTGGTTATacttaacattttgtaaatgttgtaaaaGTTGATTTGTTGCAGTTATTGGaatagaaaataactgaatgtatTCGCAGCAgagtttataattaaatatcaaaaccaAGGGTACAAGATGGCTTTGTTTAACATTCTCAAccttacaaaatattttaactttaaaaactGTTGAATGGTTAAAAACAATTGGTATGCCTCAAATGAACTTTGTGTACGGGATTTTCCTGATGTTTTTCCCGGGTCAAGTACCATTTGGGGTGATTTACCCAGTGTCTGGATTACACTTAAAAAGCTTGGAACAGATTTCTGCTGTATGGAAAATAGTCCATCAATGATTGTTTGGggtataaaactatttttagaaCTACGTTACATGTTAGTGATTCAGGAGAACAATCTGAAAGATACCTCTGGTTTGGCACAGTAACACTGAAAATTTTAGTAGTTTTAAGAGGAAAATTAGTTGTATGAAAAGGAGCAATACATGTAAAACTGCTGTGATTTTAACCAGTGGAGGAATGACACAATTGCCAGACATTAGAATTCTTATTGCCCCACCCAAAGAAAAGCTGGAGATAGACTAGAGAAATGAAGGACAGAGGGGAAAGTTCCAGTAAAGCAGGGCATCAGTAGTCCTCAgctagaaaagaaaagagagacagTTAAGAGAAGTAGAGGTGAAATGAGAAGTGTGTACAGAGTTATATCTCCCCTGTACCCTTAAAATGGAATGTAATGGGTGAGCAAACGTGCAGTCAGACCAACGGACGCTTACTTTCAATGGTGAGAATACAGGTGCTGGCAGCCGTGCCTCTGCTGTTCACTGCTTTGCACATGTATTCTCCCTCATCCTCAGGGAAGGTCTCTGGCAGATAAAGACAGTACGTTTCTCCCCTCTCAATGTACTGATAGTCCTCACAGTCCTGCAGCATTTCCCCTTCAAACCACCAGGTCACCTCTGGCTTGGGCTCTCCGTTGATTTTGACCGTAAATCGAACTGGTTCAGCGTCGACCACCGACTGGTTTTTAAGAGGCTTTTTAAACCACGGGGCTCTGGATCTCGCGTGATCCTCTTCGTCTTCATATGTTGATCCATTGACAATgctcccttcctcctcctcctcatcgtccttttCTTTTGTAAAGCTGCATCAATCTCCTGCTGTTCAAACTGCATTCTCTGTAGTTTCTGCTCTTCgatcctctttctctcctcctcttccctggCCTTTGCCATTTGCTCAAATCGAGCCCGCATGTCCACTTTGTGTTTAAATGGAGCATCTTCTACTCGGGTGACTTCCCTTCTGCCCTCTTCATCTTCTCCTGGAATCTTTCGGCTTCCCTTTCTTTGATCTCAAGGTCGATAGCCTTCCTCCGTGCTCTCTCCTCCTCGATTTTCTTCTGAATTTCCTCTTCAGTGAGTTGCTTGATCTTTTCAaactttgattttaaattctTGGCTTGTATTGAGCCAGTTCTCTTCAGGTTCAACAATTCTTCATACTCTGTGCTTACAATTTcattgctttcatttatt

Function

symbol description
nexn Predicted to enable cell-cell adhesion mediator activity. Acts upstream of or within cardiac muscle cell development. Located in Z disc. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1CC and hypertrophic cardiomyopathy 20. Orthologous to human NEXN (nexilin F-actin binding protein).

NR:

description
PREDICTED: nexilin isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181861 False 1563 lncRNA 0.41 3 11329277 11331419
TU181862 True 1564 lncRNA 0.41 3 11329277 11331419

Neighbor

gene id symbol gene type direction distance location
AMCG00004968 fubp1 coding upstream 3614 11316701 ~ 11325663 (+)
AMCG00004970 NA coding upstream 14911 11309960 ~ 11314366 (+)
AMCG00004967 txndc12 coding upstream 76447 11248140 ~ 11252830 (+)
AMCG00004959 zfyve9 coding upstream 107696 11217192 ~ 11221581 (+)
AMCG00004958 NA coding upstream 114768 11201961 ~ 11214509 (+)
AMCG00004969 LOC106596347 coding downstream 33013 11364432 ~ 11389613 (+)
AMCG00004964 NA coding downstream 70114 11401533 ~ 11410342 (+)
AMCG00004965 pigk coding downstream 141111 11472530 ~ 11482233 (+)
AMCG00004966 NA coding downstream 333427 11664846 ~ 11666101 (+)
AMCG00004976 NA coding downstream 351414 11682833 ~ 11716049 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding upstream 81469 11244602 ~ 11247808 (+)
G144549 NA non-coding upstream 129442 11198313 ~ 11199835 (+)
G144534 NA non-coding upstream 189934 11135757 ~ 11139343 (+)
G144512 NA non-coding upstream 331671 10996382 ~ 10997606 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1481521 9843429 ~ 9847756 (+)
G144658 NA non-coding downstream 174263 11505682 ~ 11505883 (+)
G144668 NA non-coding downstream 239517 11570936 ~ 11577247 (+)
G144680 NA non-coding downstream 338056 11669475 ~ 11671442 (+)
G144681 NA non-coding downstream 340136 11671555 ~ 11672485 (+)
G144682 NA non-coding downstream 341453 11672872 ~ 11673515 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1313853 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1578500 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3595218 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3636916 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3705207 7608901 ~ 7624070 (+)
G144677 NA other downstream 331262 11662681 ~ 11663368 (+)
G144940 NA other downstream 1449161 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2823736 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4048180 15379599 ~ 15384811 (+)
G145932 NA other downstream 6433838 17765257 ~ 17771525 (+)

Expression


Co-expression Network