G144657


Basic Information

Item Value
gene id G144657
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11499172 ~ 11501075 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181932
AGGTTTTTGATATCCAAAGGAGTCCCTTGAAGCAAGCGATTAATTTTTAATCCCACATCTACAACACAAAGATAACATCACTGTTAAAGGcaatttatttcaaacaaatgatCAGCAGGAAACTTCCCCAATAAGTTGAACATGGCACAAACAGAAGTATAaaaggacacacacactacagctgAAGCACCGTATGTagtgttattaataatgtacTGAAGAGATTTTTAAGGAGCTGATGAAGCAGAAGCAGTCTTGCTAATgccatattttttcattaaacagcTCACTTGTTTCCTTCATGCTGGTGTGGAACATGACAGTCAATGGAGTTATgatgctttgaaatggctccacTGCTGTAAAAGGCCAATTTCTCCTATTTGTCATATTACACTAAGAATATAACAAAGTACTACAAAATGTCATCCTCACCCAAAACCTTGTCAACACGGCTATGGAAAGGAGAGTTTCTATGAGGATTTGCAGGCAAAGAGTGTACTATCCAGTCACAGGATTACTTTATCTGTCAAACTAGACTACATGTTCTTCATCTTCAGGGGAAGCagatataatttatttgcaCTTTTCTGCAAAATGGAAGGCAAACATGGGGATTGTGAAAGCTTTCCTGAGTGAGATGTATTCAGTGACATGAGGAAAGCTGCTGTTAaatctgatttgattttgatttgaaagttTAATTGAAGCAAAAGATACTCAACTCCAGGAGATGGCTGGAACATTCCATAGCTGTTAACATTACCTCAGAGTGCTTAACATTTTCCAGgcactttaaacatttactaGTGCTGCTTCATTTCTCCTCCATTCAAGTAAAAAGttagtgttgaaaaatgtaaaaaggcaGGCTTTAAccaaaatgcaatttacaagTCTTTGACAACTCCCAGCACGTGGCACAGACTGAGGAGCACATCTCCAGGAAACAGGAAACCTAgacattataaatatactttacatacattaataaataataaaacgtTCATATGAATCCTTATCAGGATTATTAGACAATTCTAATTGTCTTGAGGCTGCAATTTACCATTAAGTTTTATGGGGTTGCAATTGAAACACAATGCTTTATCATTTGGAACATATTAATAATGgattaatacagttttattaaactgatttggtaattttttttctatatattgaAACCTAATCTAATTCTGCTCCAATAGATTTATTCATcaacattttccacatttgGTAATGTTACTATATTCCTTATTTACAAGCGATGTCtttgccttttccttttctttgtgtattgttaatgttttggGGGTTCAAGTTCAGcatcagaaaaaacacaatgaacatAATTCAGAGTACTGCCGGGCAGCTGCGTTATATTATTTTCGGTTTCCATAAACACAGTGGTCTTTTGTTTTCTCGGTAATAAGCACCAAAATGACGTAGGACTAGGGAAAGACACCCGAAGGCATTCAGACATGCTTTAATGCTCGAATCAAACTGGGCTTCCTAAACTCAACACAAACTacttttcatttctgttgtGTACTTATCAGGAGTAGCACATGTAAACTGTAATATTAGTAGTCAAATGTATCGTTTTAGTAACCAAGGAATTTCTTATGACTAATTCTGAAGATACCGAACTCTTctggactgagagagagaaaaagcatTCAAGTAAAAGGTTCCTgtacagtgacagtgatgaAGTCTGCTCCCCAAAACACAAATCAGAGCCGGCGCGCTCACATGCCCCGGAGTGGTCTTAAAATATGTGCTTCAGGTGTTTGATCCCATAGGTTTTGAAGAAAACAAGGAGAATTAATGTCCATAAGCCCAGGATGAATCCATCAGGGGGATGCCAATCCTTCTGTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181932 True 1884 lncRNA 0.37 2 11499172 11501075

Neighbor

gene id symbol gene type direction distance location
AMCG00004999 ak5,LOC102787869 coding downstream 36670 11451742 ~ 11462502 (-)
AMCG00004997 NA coding downstream 60990 11412899 ~ 11438182 (-)
AMCG00004972 NA coding downstream 137619 11343332 ~ 11361553 (-)
AMCG00004973 NA coding downstream 159562 11329243 ~ 11339610 (-)
AMCG00004971 gipc2,dnajb4,LOC108430720 coding downstream 189929 11282626 ~ 11309243 (-)
AMCG00004998 st6galnac5,LOC103370426 coding upstream 9145 11510220 ~ 11525189 (-)
AMCG00004994 st6galnac3 coding upstream 75995 11577070 ~ 11580186 (-)
AMCG00005003 st6galnac3,LOC106569362,LOC107735094 coding upstream 102519 11603594 ~ 11619275 (-)
AMCG00005000 acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding upstream 168345 11669420 ~ 11681466 (-)
AMCG00004996 lhx8,lhx8a,LOC108436043 coding upstream 286560 11787635 ~ 11796676 (-)
G144614 NA non-coding downstream 170691 11322583 ~ 11328481 (-)
G144612 fubp1 non-coding downstream 177166 11319126 ~ 11322006 (-)
G144587 NA non-coding downstream 244598 11253615 ~ 11254574 (-)
G144502 NA non-coding downstream 541171 10956085 ~ 10958001 (-)
G144353 NA non-coding downstream 1560561 9937980 ~ 9938611 (-)
G144659 NA non-coding upstream 4603 11505678 ~ 11506002 (-)
G144672 NA non-coding upstream 70115 11571190 ~ 11572410 (-)
G144821 NA non-coding upstream 508843 12009918 ~ 12010371 (-)
G144826 NA non-coding upstream 522439 12023514 ~ 12029449 (-)
G144877 toe1,LOC107579611 non-coding upstream 801504 12302579 ~ 12302836 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2592578 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 2651397 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3122171 8353989 ~ 8377001 (-)
G143659 NA other downstream 5715988 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 7382758 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 634303 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 843596 12344671 ~ 12348328 (-)
G145046 NA other upstream 1835134 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 3463339 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 4002007 15503082 ~ 15535145 (-)

Expression


Co-expression Network