G144681


Basic Information

Item Value
gene id G144681
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11671555 ~ 11672485 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181956
CTCCCCACAGCATGTTAACTGTCAATATGCAATCGCTTATTCCACAGCCCCGCTCAGACACAGAGGAAGGGTTAGCAGTGCTCTGGGAGCGTCACTTGCCATATCTCCCGGTCTGTCAGCGAACCCTCCTGTCTCTTCGTCCTGGCAGGCCAAGATAAAAGCGcgcagtttgtttttgtcaatcCAGTGGATTCTCCCGATGATTTTCAGCGAGGCCAGCACCCACCatgaataacaaacatctgGCAACTGCAAGCAGCGAAACAAACTGACTTACCACAGTAAAGCCACAACCAGTACAACCAAACCTTTTCTTGATTGATGTAgctttaaactaaactaaatgtaCACTTTCCAAGAATAGAATCTCAACAGTTGTTATCATAACTACATTTCTAagaattaatattcatattggAAAGCATTCTAactaaggaaaaacaaaactgaagtctTTAATAAGCCTGAAAAATCGACATGAAGTGCTACCCCATATATTCTCCAAGTGTATCCTAGGAGGGTTTATCTGTATAGTTCAAGATTGGAAAGAGGTGATATTTCATCCTTTTAAAATGCCTGCCGCCCACTGTTGTTTTCCCTGAATCCCAGAGATTGACCTACCTTTTCCGGCCGCCCATTGAGTCCTCCTGACGGGAGCTGTCGTTCACACAGCCACCAGCCGAGCAGGTCTGCATTCACCTGGTGCAGCTGCCCGGTCAGAGATAAGAATCCTGTACAGCAATAAATCTGAAAAGCACAGTATCAGGGGCATAATCAGCCCGATCTCAACTGCGTAGGCAGGCTGCACATACAAAACATGCAGTCAAAACAAAGAATAGAAAAATCAGAGTGGAAAATAAACAGACTGAACTGTGCAACTTCATGACTACCTAGCAATGACAGTACATTCATCACACTTATACAAAAGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181956 True 931 lncRNA 0.44 1 11671555 11672485

Neighbor

gene id symbol gene type direction distance location
AMCG00004966 NA coding upstream 5454 11664846 ~ 11666101 (+)
AMCG00004965 pigk coding upstream 189322 11472530 ~ 11482233 (+)
AMCG00004964 NA coding upstream 261213 11401533 ~ 11410342 (+)
AMCG00004969 LOC106596347 coding upstream 281942 11364432 ~ 11389613 (+)
AMCG00004968 fubp1 coding upstream 345892 11316701 ~ 11325663 (+)
AMCG00004976 NA coding downstream 10348 11682833 ~ 11716049 (+)
AMCG00004975 NA coding downstream 44837 11717322 ~ 11757176 (+)
AMCG00004974 slc44a5,LOC106613541,LOC106574020 coding downstream 87436 11759921 ~ 11782145 (+)
AMCG00004993 cryz coding downstream 166461 11838946 ~ 11840697 (+)
AMCG00004991 erich3 coding downstream 168681 11841166 ~ 11850241 (+)
G144680 NA non-coding upstream 113 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 94308 11570936 ~ 11577247 (+)
G144658 NA non-coding upstream 165672 11505682 ~ 11505883 (+)
G144603 nexn non-coding upstream 340136 11329277 ~ 11331419 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding upstream 423747 11244602 ~ 11247808 (+)
G144682 NA non-coding downstream 387 11672872 ~ 11673515 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding downstream 1754 11674239 ~ 11676905 (+)
G144788 LOC104960733 non-coding downstream 426879 12099364 ~ 12192733 (+)
G144804 NA non-coding downstream 521641 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 523787 12196272 ~ 12196773 (+)
G144677 NA other upstream 8187 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1656131 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1920778 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3937496 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3979194 7672816 ~ 7692361 (+)
G144940 NA other downstream 1108095 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2482670 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3707114 15379599 ~ 15384811 (+)
G145932 NA other downstream 6092772 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 7142544 18815029 ~ 18821642 (+)

Expression


Co-expression Network