G144788 (LOC104960733)


Basic Information

Item Value
gene id G144788
gene name LOC104960733
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12099364 ~ 12192733 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182090
ggagttttttttTGAGggagtttttgtatttttattgatgtgGTATCAAACAGCTCTGTACATTTATTTGCCTTTCTTGGCCTTGATCTTCCTCAGGTAGAATTCCAGCTCTTTGCCTTCCAGGACATAGCCATCCGCCCTGCCACACTGACCAGGCCTTGAGGCGATGCAGGCAGCAGTTTGCCCTGCATGAACTGCTCCTCCAGGAGAGTGCTGATCTTGCAGTTCTTCTTGCGCTCATCGTATTTCTTCTGGATTTTCTTCGACCTCTTCTTGTTCAggatctcctcctcctcaggggtAGCTTGGCTCCCTTCTTGCGTCCGAGGGGAGTAGCGTAGTGAGCCTCATACCACTGCCTGTAGGGGGTGCTGTCGACCAGGACGATGCAGTTCTTCACCAGAGTCTTGGTTCTCACCAGCTCGTTGTTGGAGGCGTTGTACACCACATCGATGATCCTGGTCTTGCGGGTGCAGCGAAAGAAACTCACACTCTGAGCCCCAAGAGAAGTTGCCAACATCCAACCTGAGAGCACGGTACTTCTTGTTGCCACCACGGACTCTCACAATGGATGTTG
>TU182091
ggagttttttttTGAGggagtttttgtatttttattgatgtgGTATCAAACAGCTCTGTACATTTATTTGCCTTTCTTGGCCTTGATCTTCCTCAGGTAGAATTCCAGCTCTTTGCCTTCCAGGACATAGCCATCCGCCCTGCCACACTGACCAGGCCTTGAGGCGATGCAGGCAGCAGTTTGCCCTGCATGAACTGCTCCTCCAGGAGAGTGCTGATCTTGCAGTTCTTCTTGCGCTCATCGTATTTCTTCTGGATTTTCTTCGACCTCTTCTTGTTCAggatctcctcctcctcaggggtcGCTTGGCTCCCTTCTTGCGTCCGAGGGGAGTAGCGTAGTGAGCCTCATACCACTGCCTGTAGGGGGTGCTGTCGACCAGGACGATGCAGTTCTTCACCAGAGTCTTGGTTCTCACCAGCTCGTTGTTGGAGGCGTTGTACACCACATCGATGATCCTGGTCTTGCGGGTGCAGCGAAAGAAACTCACACTCTGAGCCCCAAGAGAAGTTGCCAACATCCAACCTGAGAGCACGGTACTTCTTGTTGCCACCACGGACTCTCACAGTGTGGATGCGCCGGGCTCCTGAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182090 False 577 lncRNA 0.51 6 12099364 12176426
TU182091 True 595 lncRNA 0.52 6 12099364 12192733

Neighbor

gene id symbol gene type direction distance location
AMCG00005008 glis1 coding upstream 15863 12066384 ~ 12083501 (+)
AMCG00004983 NA coding upstream 61982 12029197 ~ 12037382 (+)
AMCG00004981 NA coding upstream 75165 12020156 ~ 12024199 (+)
AMCG00004985 NA coding upstream 81959 12015575 ~ 12017405 (+)
AMCG00004982 NA coding upstream 89170 12008911 ~ 12010194 (+)
AMCG00005014 NA coding downstream 108608 12301341 ~ 12307027 (+)
AMCG00005016 NA coding downstream 152793 12345526 ~ 12346830 (+)
AMCG00005015 dmap1,LOC107750524,LOC107699933,LOC107548533 coding downstream 155811 12348544 ~ 12368396 (+)
AMCG00005013 LOC107657453 coding downstream 280818 12473551 ~ 12480425 (+)
AMCG00005023 LOC106599374 coding downstream 381520 12574253 ~ 12607617 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 422459 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 425849 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 426879 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 427922 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 522117 11570936 ~ 11577247 (+)
G144804 NA non-coding downstream 1393 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 3539 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 46758 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 63555 12256288 ~ 12257869 (+)
G144908 NA non-coding downstream 423905 12616638 ~ 12616932 (+)
G144677 NA other upstream 435996 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2083940 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2348587 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4365305 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4407003 7672816 ~ 7692361 (+)
G144940 NA other downstream 587847 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 1962422 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3186866 15379599 ~ 15384811 (+)
G145932 NA other downstream 5572524 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6622296 18815029 ~ 18821642 (+)

Expression


Co-expression Network