G144893


Basic Information

Item Value
gene id G144893
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12367423 ~ 12368468 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182222
ACAGTGAAGTCTATGCCTGAGATCAGCAGGTTCATGAAACTTCTTCAGTTGTGTCCTAATTTAAAGAGACTGTCagtgtcaaatgtatttatttattagatgaCATGGACAAGACTTTATTCTGATCTCTGAAACTAGTCTATACTTGATGAAATAACTTTAAAACTCATGCAAGctgaaaatgacatttaatatgatatttttctgaacaaaaacaaacttatcTACACAGACAGGCTCAGGTGGCTCGGGCTCAGCAGAGAACTGGAGGGATGGATGTCATATTGTCCCAGTGTGCTCCTCTCTCCTGCTTACTCAGTGCTAGCCTTTATAGACATGTGCCTGAATGATGAGGGGTACAGGTCAGGGAACCATTGTGACACAGAGAGGTAGTTTAGTCTGGAAACTAGACGGGCCATTTTCACTCCTTCGGCAAATatctaaaaaacattttaaaacatacccCCTTCACTATagcagagactgagagacaagataaacaggaagtcatcaAGGCTCTGCCCCACAGATGGTCAGTCTAACGCTACGTTACCTTTCCCCCCGGCACTTAATACATGCGTCttaaatgctatttaaaaaaattatacattccCAGAAAAGGTCACTTCTTTAGGGTAAATTACAGTTGATCAAGGTTCATTTTATCTTTCAgagtagaaaaaacaacagcaaatgaAACGGTGGACTGGAATGCGAGTGAGAGTCCAGGTGGTGTTGGGGATGGTGTGGTTGAGACTGAAACGGGAAGTGGCGAGCGAGTGTTGGAGTTGTGGCCAGCGGTGTGGGCAGGACTTCCTCTTCGAGAGACGGGCGGGCGGTCTGGCAGGGAGCAGCTGGCCTGTCCGCTGATGGATGGGAACCCCAGGACAGCTGAGAGGCTTTAGGAAGCTGCCGTGGCTGGTTTAACAGAGACCAGTCCATGCCCTTTCCCTCAGCTGGGTTCCTCCTTGACgcatttttaaatctcttcACAGTTTCTTGGCTTTCTTTATAGAGGAAGAACTGGAGGCCGATTCCCTTCGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182222 True 1046 lncRNA 0.45 1 12367423 12368468

Neighbor

gene id symbol gene type direction distance location
AMCG00005019 NA coding downstream 22755 12340168 ~ 12344668 (-)
AMCG00005018 NA coding downstream 51771 12310351 ~ 12315652 (-)
AMCG00005020 NA coding downstream 66914 12298967 ~ 12300509 (-)
AMCG00005017 NA coding downstream 69641 12289910 ~ 12297782 (-)
AMCG00005021 NA coding downstream 78905 12284394 ~ 12288518 (-)
AMCG00005012 NA coding upstream 75884 12444352 ~ 12454372 (-)
AMCG00005029 NA coding upstream 411803 12780271 ~ 12801667 (-)
AMCG00005026 b4galt2 coding upstream 450142 12818610 ~ 12842175 (-)
AMCG00005027 b4galt2,LOC106599387,LOC107700994,LOC107557142,LOC107713046 coding upstream 535997 12904465 ~ 12907715 (-)
AMCG00005025 atp6v0b coding upstream 571047 12939515 ~ 12948955 (-)
G144880 NA non-coding downstream 62536 12304623 ~ 12304887 (-)
G144879 NA non-coding downstream 63803 12303411 ~ 12303620 (-)
G144878 NA non-coding downstream 64160 12302965 ~ 12303263 (-)
G144877 toe1,LOC107579611 non-coding downstream 64587 12302579 ~ 12302836 (-)
G144826 NA non-coding downstream 337974 12023514 ~ 12029449 (-)
G144920 NA non-coding upstream 247247 12615715 ~ 12615950 (-)
G144941 NA non-coding upstream 412105 12780573 ~ 12781170 (-)
G144954 NA non-coding upstream 444509 12812977 ~ 12815518 (-)
G145031 NA non-coding upstream 889454 13257922 ~ 13258861 (-)
G145129 NA non-coding upstream 1693253 14061721 ~ 14062111 (-)
AMCG00005022 NA other downstream 19095 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 211045 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3460829 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3519648 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3990422 8353989 ~ 8377001 (-)
G145046 NA other upstream 967741 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2595946 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3134614 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3590236 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 5174678 17543146 ~ 17546332 (-)

Expression


Co-expression Network