G144920


Basic Information

Item Value
gene id G144920
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12615715 ~ 12615950 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182259
tctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggactttaCTGtctagcacatcccacagatgctcgattggatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccactgctccgtggtccagttctgatgctcatgtgcccattgtaggcgctttcaagAGCAACAGATTCC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU182259 True 236 lncRNA 0.52 1 12615715 12615950

Neighbor

gene id symbol gene type direction distance location
AMCG00005012 NA coding downstream 161343 12444352 ~ 12454372 (-)
AMCG00005019 NA coding downstream 271047 12340168 ~ 12344668 (-)
AMCG00005018 NA coding downstream 300063 12310351 ~ 12315652 (-)
AMCG00005020 NA coding downstream 315206 12298967 ~ 12300509 (-)
AMCG00005017 NA coding downstream 317933 12289910 ~ 12297782 (-)
AMCG00005029 NA coding upstream 164321 12780271 ~ 12801667 (-)
AMCG00005026 b4galt2 coding upstream 202660 12818610 ~ 12842175 (-)
AMCG00005027 b4galt2,LOC106599387,LOC107700994,LOC107557142,LOC107713046 coding upstream 288515 12904465 ~ 12907715 (-)
AMCG00005025 atp6v0b coding upstream 323565 12939515 ~ 12948955 (-)
AMCG00005034 ptch2,LOC106569083,LOC106599390,LOC107557169 coding upstream 523230 13139180 ~ 13170347 (-)
G144893 NA non-coding downstream 247247 12367423 ~ 12368468 (-)
G144880 NA non-coding downstream 310828 12304623 ~ 12304887 (-)
G144879 NA non-coding downstream 312095 12303411 ~ 12303620 (-)
G144878 NA non-coding downstream 312452 12302965 ~ 12303263 (-)
G144877 toe1,LOC107579611 non-coding downstream 312879 12302579 ~ 12302836 (-)
G144941 NA non-coding upstream 164623 12780573 ~ 12781170 (-)
G144954 NA non-coding upstream 197027 12812977 ~ 12815518 (-)
G145031 NA non-coding upstream 641972 13257922 ~ 13258861 (-)
G145129 NA non-coding upstream 1445771 14061721 ~ 14062111 (-)
G145130 NA non-coding upstream 1446394 14062344 ~ 14062624 (-)
AMCG00005022 NA other downstream 267387 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 459337 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3709121 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3767940 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 4238714 8353989 ~ 8377001 (-)
G145046 NA other upstream 720259 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2348464 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 2887132 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3342754 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 4927196 17543146 ~ 17546332 (-)

Expression


Co-expression Network