G144942


Basic Information

Item Value
gene id G144942
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12782170 ~ 12783644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182288
tgtctatttttgaaagcattcttactttacagcatttcttcatACCTGCCTataacttttgcacagtactgtataacagagtctgtatataatacatgttAAGTTAATACCAGTCCTTTTCACAGTATGTTCTGGGTATGAGTGTCTAACACATAAACCATAGTTATATTTGTAAcattcatacatatatgtatatataatgtgtgtgtgtgtgtgtgtgtatatagacacacatatatacatatacacacagtacacttCCTAATAGGTCCCTCAATGCACAGGTCCAACCAGTGCACCTTGTTTTAAAAGGTTACTGCTGGGAGAATACAATATTAAGTAACAAAGCTAACCGATAACTACACATTctgtaaaaacttttttttttttttttttttttaaggatgttACCTCACTTTCATGTTTAGTGTAGTTTTTATAGATTTACCCAGCATGGGCCTATGTTTTTTCTGTATGACCCTAATATTCTCCTTGAGGTTTAATGCTGCTCCTGAGCAGGAACAGTGGAGTTAATTATAGGAACTATTGGGTTACCTGTAGTTACTTGAAGTGCACAGGTGCTATTATTGAATACCAttgataaacaaatatattctcaACTAAGCACAAAAAAGGACCTGCAAAAACGTTTcagtttaattgctttaaaggcacatctgcaaaataattatatacaaaattCTAAAACATACCGTGATACTGATCTCTATCTGCACAGAGCAGTATGTTTgaaacttacatttaaaaagagatcTAACCAAAAACACATCCAATACGTTTAACCAATTATATAGTACTGCCATAACTGTCTTCCTGTTATTTAAACTATATTCTTAAGCCATGAATTggataaaatgtaatacttgATATTAATAAAGCCgtacttttaattgtttacttCCACTGTATATTTAGCAGCTGGGTCTCCGCTCCCAttataaatcaatgttttctCTTCAGATTTCTTCTCTTACACTAGTGGTGTTTGTGTGGTGGTGGTAGGAAGGTGGTTCACCTCATTTTTAAAGTAGAGCAACAACTCCAGTCAAACCTACTGTTTTGTTAACAGCAATGGATTCCCTTGTGTTTTCCTCATTCAGTGCtgaatgcatttgtgtgtcCATTATAAAACAGCATGACTATAAGTGTATGTATTGTGTCACAATATCCaatgtaaatttgtatttttaattttaaaaatgggaGTGCAAGCtagctttaaagaaaaaactctAGATGACGTGTAAAACAATGCTGTATTGTTACAAGATCTTTTTTGTTAGACATGTGAATAAAGAATAGCAATTAACCT
>TU182289
aaaaactgtgtgcaagtgaacctagaagaactgatgctgttttgaaggcaaatggtgtcacaccaaatatggatttgatgcagatttttcttctgttcactcactttgcatttagttaactgagaaatacaatctattaacatgtctatttttgaaagcattcttactttacagcatttcttcatACCTGCCTataacttttgcacagtactgtataacagagtctgtatataatacatgttAAGTTAATACCAGTCCTTTTCACAGTATGTTCTGGGTATGAGTGTCTAACACATAAACCATAGTTATATTTGTAAcattcatacatatatgtatatataatgtgtgtgtgtgtgtgtgtgtatatagacacacatatatacatatacacacagtacacttCCTAATAGGTCCCTCAATGCACAGGTCCAACCAGTGCACCTTGTTTTAAAAGGTTACTGCTGGGAGAATACAATATTAAGTAACAAAGCTAACCGATAACTACACATTctgtaaaaacttttttttttttttttttttttaaggatgttACCTCACTTTCATGTTTAGTGTAGTTTTTATAGATTTACCCAGCATGGGCCTATGTTTTTTCTGTATGACCCTAATATTCTCCTTGAGGTTTAATGCTGCTCCTGAGCAGGAACAGTGGAGTTAATTATAGGAACTATTGGGTTACCTGTAGTTACTTGAAGTGCACAGGTGCTATTATTGAATACCAttgataaacaaatatattctcaACTAAGCACAAAAAAGGACCTGCAAAAACGTTTcagtttaattgctttaaaggcacatctgcaaaataattatatacaaaattCTAAAACATACCGTGATACTGATCTCTATCTGCACAGAGCAGTATGTTTgaaacttacatttaaaaagagatcTAACCAAAAACACATCCAATACGTTTAACCAATTATATAGTACTGCCATAACTGTCTTCCTGTTATTTAAACTATATTCTTAAGCCATGAATTggataaaatgtaatacttgATATTAATAAAGCCgtacttttaattgtttacttCCACTGTATATTTAGCAGCTGGGTCTCCGCTCCCAttataaatcaatgttttctCTTCAGATTTCTTCTCTTACACTAGTGGTGTTTGTGTGGTGGTGGTAGGAAGGTGGTTCACCTCATTTTTAAAGTAGAGCAACAACTCCAGTCAAACCTACTGTTTTGTTAACAGCAATGGATTCCCTTGTGTTTTCCTCATTCAGTGCtgaatgcatttgtgtgtcCATTATAAAACAGCATGACTATAAGTGTATGTATTGTGTCACAATATCCaatgtaaatttgtatttttaattttaaaaatgggaGTGCAAGCtagctttaaagaaaaaactctAGATGACGTGTAAAACAATGCTGTATTGTTACAAGATCTTTTTTGTTAGACATGTGAATAAAGAATAGCAATTAACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182288 False 1333 lncRNA 0.33 1 12782312 12783644
TU182289 True 1475 lncRNA 0.33 1 12782170 12783644

Neighbor

gene id symbol gene type direction distance location
AMCG00005028 slc6a9 coding upstream 1718 12769739 ~ 12780452 (+)
AMCG00005024 NA coding upstream 82709 12696312 ~ 12699461 (+)
AMCG00005023 LOC106599374 coding upstream 174553 12574253 ~ 12607617 (+)
AMCG00005013 LOC107657453 coding upstream 301745 12473551 ~ 12480425 (+)
AMCG00005015 dmap1,LOC107750524,LOC107699933,LOC107548533 coding upstream 413774 12348544 ~ 12368396 (+)
AMCG00005030 LOC102231678,LOC103359748,LOC108430294 coding downstream 19641 12803285 ~ 12810937 (+)
AMCG00005031 LOC105920302 coding downstream 166859 12950503 ~ 12954868 (+)
AMCG00005032 kiss1ra,LOC108411985,LOC106569085,LOC105898653 coding downstream 234893 13018537 ~ 13028796 (+)
AMCG00005033 NA coding downstream 327573 13111217 ~ 13119024 (+)
AMCG00005035 NA coding downstream 512130 13295774 ~ 13298682 (+)
G144908 NA non-coding upstream 165238 12616638 ~ 12616932 (+)
G144811 NA non-coding upstream 524301 12256288 ~ 12257869 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding upstream 539972 12239491 ~ 12242198 (+)
G144805 LOC107679324,LOC107728925 non-coding upstream 585397 12196272 ~ 12196773 (+)
G144804 NA non-coding upstream 587832 12194126 ~ 12194338 (+)
G144960 NA non-coding downstream 163538 12947182 ~ 12948973 (+)
G145007 NA non-coding downstream 421696 13205340 ~ 13208217 (+)
G145017 NA non-coding downstream 474073 13257717 ~ 13259076 (+)
G145039 NA non-coding downstream 531734 13315378 ~ 13317852 (+)
G145067 NA non-coding downstream 789598 13573242 ~ 13573460 (+)
G144940 NA other upstream 1000 12780580 ~ 12781170 (+)
G144677 NA other upstream 1118802 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2766746 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 3031393 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 5048111 7718273 ~ 7734059 (+)
AMCG00005060 LOC106599426 other downstream 1371511 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 2595955 15379599 ~ 15384811 (+)
G145932 NA other downstream 4981613 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6031385 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 6691495 19475139 ~ 19530453 (+)

Expression


Co-expression Network