G144954


Basic Information

Item Value
gene id G144954
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12812977 ~ 12815518 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182307
TAATAGAGAATAGATTGCTTCTACTTAAATACTTCcagttttattatacatttactttatcAAATCAATCACAagcattatataaataaattaatggatgaataaaagcaaaatttagaaacaaatatgaaatataactGAACAGGTTTGGGtctatgattaaaataaaaacaaatatttattaagttGATGCTTTGTTTATGAGCGTGCACaatttttatattatgtatattttttatccCTGCAAGTAAATAGTCTGATTTCAGTGATATAAGGTTTAAGCTGCTTAGCAGTGGAAAAGCCAATATTTAAGTATCCAGTATTTAGTTAACTGTTTCAGTATCACTAATACTGATAACGCTGTCCATATTTCTGTCTATCTACTGTATACTAAAACATGGTATCCCtgctttaatataaattaatataaattcaaaAAAATGGTGTTGGTGTTTTATGGCCTTCATTGCTGTGGAATTCGAATGAATAAACCTGAATCTTTACGGGCTATTGCAGTTTTCCAAAATAACACTTTGAACTCTGTCTCTATTGTTGTGATATTGATTGGCATGATACTTCTGTAATATTAATCAGAGTAAACCTCTGATTGTTAATCCATACTGTTATTATAAAGTCATTCAAACCCGCCGTGTTTTCGATTACATTACGTTTGAGAAAAATGACTGTCGCTTTTGAGAGCTCTGGGTTTTTTCCCATTCCTCCCTCAACATGCTCTGAAATACTCAATTTGTCCACTAGCAGGTGATTTGACGTGCCAGGACTGTGCCGGCTCTTGCCAAATAAGACTGTTAACTCCCGTCTTTCACTCGTATCAGAGTACCATTGCCACAGGTGTCTCTCAGCAAATGCAATCTGAAAACTGTCGCAAGGCTGTTAGTCAGAGGAGATGAATTAAGGAGTGGAGCTCGAATCCGCAGAGCGACAGGGAGGCGGTGGGGTGCTTCCCTTGGTCAGAGTCTGGCTGTGATCTCTGTAGCACCGCAGATTGAGCAGCATGGTGCAGtactttgtcattttaaatgggTCATTTTGTAACGTCATTGTTGGAAAGTGTTGCATACTTGTTGCACCTCCTCAGTGCTAATATAAAGGCCCTTGAACAGATTAAagttaggtgttttttttttttgcagagatGACTGTGGGCACAATGTAGACATTAGTTTCTTGATTTGATTGGTTGAAATGTCACAATGCTCAACATGTTGTCTTCTGTGGGAGTCCTTAGTGATAGTGTATTCAAGGACACAGCCGGGAAAGCGTGCTATACCCTGCCTTTTTATATGGCACATTTCTGAATCTAATTGACTTAATGCACAAAAtgctgattaaaatattttctttctttttttaagtgctAATCTTAGGGAAAAGTCCCGTCTTTATTGCAATAGCTGACTGTGGCATGGCCATTTCCCGTGAAGTCCTTGGGTTTATCTTCAAGGATGAGATGCTCCAGCATTTGTAAGATGTTCACAGCAGAGCCGTTCTGATTCAAACACAGCGATGCCATTCGTACCACTTGGGGGATAGGTTTTagtttttggtgttttgttatattgtttgtttccttgcCAAGATTTGCCAAATGTGTAGCGGTaacatgtaaaaacaatgtCTGGCTAGTTTGTGCAGTTAAACCTGGATTGTGTCGATCCtgtattacaaattatttatatcAAACTAATCTCAACCCCAAAAATGCCCGTCAACTGCACATTCTTATACCTGTATTAGAGCGGAGAGAAAATCTGATTTTGGAAACCACGTTTAATTACTGTaacatttaattcactttttatttctttatacaCACTATCAGAGGGTGTCTCATGgttaataaatcatacatttctgGTACTCTTCCAATGAAAGACTGTTTTGACACATGTACAACCATTTTCTTTCCAGACGTCCCTTTATTTTACCTCATATTGAGTTTTGTTTGGTGCCCGTAGGATAACTAACTGGAAAATATGGACTGCATACTTATTTTGCCATTATTTGAAGTAtgaatgaaaagtaatttaccAGTACATGTCTCTGCAGTTTTTCCCCGCCAACTGTATCTGATGTaccattgattttaattatatcctatgaaagcaaacaaaatggatGCTAACCACGTAGTAAATGTGTTGCTTCTTATCATTTTAGAAATTTTTCTGTTACTGAGACCCAGTTCTGCATCTACTGCTTTCTGAAGCATTTCACCCCACCTCCCTTTTCATCcattaatttgttgttgttattaataataataattaattaataataatttcaaagcTCTATCAGTAGAATATTTGTCCATTTCCTcctgagtaaaacaaacaaacaaaaaaattgaggacaattttcttttcaaatgcacataTACGGATTGCCTTGGGCTTAAGGGTCTGGGAGCATTTTAAAGAATTTACTGTATCTATCTAGGTTTTGTACATtgaatgttgaaaatgtaaaatcttatATAGAATGCATAATGTCATATCAAACCTACTTTTTGtatacaatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182307 True 2542 lncRNA 0.35 1 12812977 12815518

Neighbor

gene id symbol gene type direction distance location
AMCG00005029 NA coding downstream 11310 12780271 ~ 12801667 (-)
AMCG00005012 NA coding downstream 358605 12444352 ~ 12454372 (-)
AMCG00005019 NA coding downstream 468309 12340168 ~ 12344668 (-)
AMCG00005018 NA coding downstream 497325 12310351 ~ 12315652 (-)
AMCG00005020 NA coding downstream 512468 12298967 ~ 12300509 (-)
AMCG00005026 b4galt2 coding upstream 3092 12818610 ~ 12842175 (-)
AMCG00005027 b4galt2,LOC106599387,LOC107700994,LOC107557142,LOC107713046 coding upstream 88947 12904465 ~ 12907715 (-)
AMCG00005025 atp6v0b coding upstream 123997 12939515 ~ 12948955 (-)
AMCG00005034 ptch2,LOC106569083,LOC106599390,LOC107557169 coding upstream 323662 13139180 ~ 13170347 (-)
AMCG00005038 eif2b3,LOC106569082,LOC107558289 coding upstream 368157 13183675 ~ 13218177 (-)
G144941 NA non-coding downstream 31807 12780573 ~ 12781170 (-)
G144920 NA non-coding downstream 197027 12615715 ~ 12615950 (-)
G144893 NA non-coding downstream 444509 12367423 ~ 12368468 (-)
G144880 NA non-coding downstream 508090 12304623 ~ 12304887 (-)
G144879 NA non-coding downstream 509357 12303411 ~ 12303620 (-)
G145031 NA non-coding upstream 442404 13257922 ~ 13258861 (-)
G145129 NA non-coding upstream 1246203 14061721 ~ 14062111 (-)
G145130 NA non-coding upstream 1246826 14062344 ~ 14062624 (-)
G145131 NA non-coding upstream 1247347 14062865 ~ 14063123 (-)
G145138 NA non-coding upstream 1342062 14157580 ~ 14161976 (-)
AMCG00005022 NA other downstream 464649 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 656599 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3906383 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3965202 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 4435976 8353989 ~ 8377001 (-)
G145046 NA other upstream 520691 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2148896 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 2687564 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3143186 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 4727628 17543146 ~ 17546332 (-)

Expression


Co-expression Network